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12种鱼类基因家族的比较分析

Comparative Analysis of the Gene Family in 12 Fish Species.

作者信息

Cao Jun, Shi Feng

机构信息

Institute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.

Corporation of Lvdou Biopharmaceuticals, Binzhou 256600, China.

出版信息

Animals (Basel). 2019 May 13;9(5):233. doi: 10.3390/ani9050233.

Abstract

Aquaporins (Aqps) are a class of water channel proteins that play key roles in many physiological functions and cellular processes. Here, we analyzed 166 putative genes in 12 fish species and divided them into four groups. Gene organization and motif distribution analyses suggested potentially conserved functions in each group. Several recombination events were identified in some members, which accelerate their divergence in evolution. Furthermore, a few positive selection sites were identified, and mutations at these sites could alter the stability of Aqp proteins. In addition, expression profiles of some genes under pathogen infection and organophosphorus pesticide stress were also investigated. The result implied that several genes may affect different immune responses and osmoregulation. This study provides a comparative analysis of the fish gene family to facilitate further functional analyses.

摘要

水通道蛋白(Aquaporins,Aqps)是一类水通道蛋白,在许多生理功能和细胞过程中发挥关键作用。在此,我们分析了12种鱼类中的166个假定基因,并将它们分为四组。基因组织和基序分布分析表明每组中可能存在保守功能。在一些成员中鉴定出了几个重组事件,这些事件加速了它们在进化中的分化。此外,还鉴定出了一些正选择位点,这些位点的突变可能会改变水通道蛋白的稳定性。此外,还研究了一些基因在病原体感染和有机磷农药胁迫下的表达谱。结果表明,几个基因可能影响不同的免疫反应和渗透调节。本研究对鱼类基因家族进行了比较分析,以促进进一步的功能分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c550/6562760/4fe475f3c8b7/animals-09-00233-g001.jpg

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