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基于转录组的黑龙江刺鱼在乐果处理下的基因鉴定、分子进化及表达谱分析

Transcriptome-Based Identification and Molecular Evolution of the Genes and Expression Profiling under Dimethoate Treatment in Amur Stickleback ().

作者信息

Cao Jun, Cheng Xiuzhu

机构信息

Institute of Life Sciences, Jiangsu University, Zhenjiang 212013, China.

出版信息

Animals (Basel). 2019 Oct 28;9(11):873. doi: 10.3390/ani9110873.

DOI:10.3390/ani9110873
PMID:31661806
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6912322/
Abstract

Cytochrome P450s (CYPs) are a family of membrane-bound mono-oxygenase proteins, which are involved in cell metabolism and detoxification of various xenobiotic substances. In this study, we identified 58 putative genes in Amur stickleback () based on the transcriptome sequencing. Conserved motif distribution suggested their functional relevance within each group. Some present recombination events have accelerated the evolution of this gene family. Moreover, a few positive selection sites were identified, which may have accelerated the functional divergence of this family of proteins. Expression patterns of these genes were investigated and indicated that most were affected by dimethoate treatment, suggesting that were involved in the detoxication of dimethoate. This study will provide a foundation for the further functional investigation of genes in fishes.

摘要

细胞色素P450(CYPs)是一类膜结合单加氧酶蛋白家族,参与细胞代谢以及各种外源性物质的解毒过程。在本研究中,我们基于转录组测序在黑龙江刺鱼()中鉴定出58个推定基因。保守基序分布表明了它们在每组中的功能相关性。一些现存的重组事件加速了该基因家族的进化。此外,还鉴定出了一些正选择位点,这些位点可能加速了该蛋白家族的功能分化。对这些基因的表达模式进行了研究,结果表明大多数基因受乐果处理的影响,这表明它们参与了乐果的解毒过程。本研究将为进一步开展鱼类基因的功能研究奠定基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/0d1838434eb7/animals-09-00873-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/6b93c6143537/animals-09-00873-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/c7587028f99d/animals-09-00873-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/3d55f0548096/animals-09-00873-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/01e3e3f48173/animals-09-00873-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/0d1838434eb7/animals-09-00873-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/6b93c6143537/animals-09-00873-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/c7587028f99d/animals-09-00873-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/3d55f0548096/animals-09-00873-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/01e3e3f48173/animals-09-00873-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/841a/6912322/0d1838434eb7/animals-09-00873-g005.jpg

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本文引用的文献

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Ecotoxicology. 2019 Jul;28(5):539-549. doi: 10.1007/s10646-019-02051-z. Epub 2019 May 22.
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Comparative Analysis of the Gene Family in 12 Fish Species.12种鱼类基因家族的比较分析
Animals (Basel). 2019 May 13;9(5):233. doi: 10.3390/ani9050233.
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Comprehensive Analysis of the Chitinase Family Genes in Tomato ().番茄中几丁质酶家族基因的综合分析()。 (注:原文括号内内容缺失)
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