Division of Life Science, Division of Applied Life Science (BK21 Plus), Research Institute of Natural Science (RINS), Gyeongsang National University (GNU), 501 Jinju-daero, Jinju 52828, Republic of Korea.
Department of Genetics, University College of Science, Osmania University, Hyderabad, 500 007 Telangana, India.
Oxid Med Cell Longev. 2019 Apr 4;2019:5189490. doi: 10.1155/2019/5189490. eCollection 2019.
Breast cancer (BC) is the leading cause of death among women worldwide devoid of effective treatment. It is therefore important to develop agents that can reverse, reduce, or slow the growth of BC. The use of natural products as chemopreventive agents provides enormous advantages. The aim of the current investigation is to determine the efficacy of the phytochemicals against BC along with the approved drugs to screen the most desirable and effective phytocompound. In the current study, 36 phytochemicals have been evaluated against aromatase to identify the potential candidate drug along with the approved drugs employing the Cdocker module accessible on the Discovery Studio (DS) v4.5 and thereafter analysing the stability of the protein ligand complex using GROningen MAchine for Chemical Simulations v5.0.6 (GROMACS). Additionally, these compounds were assessed for the inhibitory features employing the structure-based pharmacophore (SBP). The Cdocker protocol available with the DS has computed higher dock scores for the phytochemicals complemented by lower binding energies. The top-ranked compounds that have anchored with key residues located at the binding pocket of the protein were subjected to molecular dynamics (MD) simulations employing GROMACS. The resultant findings reveal the stability of the protein backbone and further guide to comprehend on the involvement of key residues Phe134, Val370, and Met374 that mechanistically inhibit BC. Among 36 compounds, curcumin, capsaicin, rosmarinic acid, and 6-shogaol have emerged as promising phytochemicals conferred with the highest Cdocker interaction energy, key residue interactions, stable MD results than reference drugs, and imbibing the key inhibitory features. Taken together, the current study illuminates the use of natural compounds as potential drugs against BC. Additionally, these compounds could also serve as scaffolds in designing and development of new drugs.
乳腺癌(BC)是全球女性死亡的主要原因,目前缺乏有效的治疗方法。因此,开发能够逆转、减少或减缓 BC 生长的药物非常重要。使用天然产物作为化学预防剂具有巨大的优势。本研究旨在确定植物化学物质对 BC 的疗效,以及与已批准药物一起筛选最理想和有效的植物化合物。在目前的研究中,已经评估了 36 种植物化学物质对芳香酶的作用,以确定潜在的候选药物,以及使用 Discovery Studio (DS) v4.5 上可访问的 Cdocker 模块和随后使用 Groningen 化学模拟机 v5.0.6 (GROMACS) 分析蛋白质配体复合物的稳定性来识别批准的药物。此外,还使用基于结构的药效团 (SBP) 评估这些化合物的抑制特征。DS 上的 Cdocker 协议为植物化学物质计算了更高的对接分数,并具有更低的结合能。与位于蛋白质结合口袋的关键残基结合的排名最高的化合物被用 GROMACS 进行分子动力学 (MD) 模拟。结果表明,蛋白质骨架的稳定性进一步指导理解关键残基 Phe134、Val370 和 Met374 的参与,这些残基在机制上抑制了 BC。在 36 种化合物中,姜黄素、辣椒素、迷迭香酸和 6-姜烯醇已成为有前途的植物化学物质,它们具有最高的 Cdocker 相互作用能、关键残基相互作用、比参考药物更稳定的 MD 结果,并具有关键的抑制特征。总之,本研究阐明了天然化合物作为治疗 BC 的潜在药物的用途。此外,这些化合物还可以作为设计和开发新药的支架。