Department of Mechanical Engineering, Tufts University, Medford, MA 02155.
Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA 02139-4307.
Proc Natl Acad Sci U S A. 2019 Jun 4;116(23):11119-11124. doi: 10.1073/pnas.1819613116. Epub 2019 May 16.
The natural habitats of planktonic and swimming microorganisms, from algae in the oceans to bacteria living in soil or intestines, are characterized by highly heterogeneous fluid flows. The complex interplay of flow-field topology, self-propulsion, and porous microstructure is essential to a wide range of biophysical and ecological processes, including marine oxygen production, remineralization of organic matter, and biofilm formation. Although much progress has been made in the understanding of microbial hydrodynamics and surface interactions over the last decade, the dispersion of active suspensions in complex flow environments still poses unsolved fundamental questions that preclude predictive models for microbial transport and spreading under realistic conditions. Here, we combine experiments and simulations to identify the key physical mechanisms and scaling laws governing the dispersal of swimming bacteria in idealized porous media flows. By tracing the scattering dynamics of swimming bacteria in microfluidic crystal lattices, we show that hydrodynamic gradients hinder transverse bacterial dispersion, thereby enhancing stream-wise dispersion [Formula: see text]-fold beyond canonical Taylor-Aris dispersion of passive Brownian particles. Our analysis further reveals that hydrodynamic cell reorientation and Lagrangian flow structure induce filamentous density patterns that depend upon the incident angle of the flow and disorder of the medium, in striking analogy to classical light-scattering experiments.
浮游生物和游动微生物的自然栖息地,从海洋中的藻类到生活在土壤或肠道中的细菌,其特点是具有高度不均匀的流体流动。流场拓扑、自推进和多孔微观结构的复杂相互作用对广泛的生物物理和生态过程至关重要,包括海洋氧气产生、有机物再矿化和生物膜形成。尽管在过去十年中,人们在微生物水动力和表面相互作用的理解方面取得了很大进展,但活性悬浮液在复杂流动环境中的分散仍然存在未解决的基本问题,这些问题排除了在实际条件下预测微生物输运和扩散的模型。在这里,我们结合实验和模拟来确定控制游动细菌在理想化多孔介质流中分散的关键物理机制和标度律。通过在微流控晶体格子中追踪游动细菌的散射动力学,我们表明,流体动力梯度阻碍了横向细菌的分散,从而使细菌的纵向分散比被动布朗粒子的经典泰勒-阿里斯分散增强了[Formula: see text]倍。我们的分析进一步揭示了,流体动力单元的重新定向和拉格朗日流结构诱导了丝状密度模式,这些模式依赖于流动的入射角度和介质的无序性,与经典的光散射实验形成鲜明对比。