普罗威登斯菌APW139_S1的基因组序列草图，这是一株产生NDM-18的临床菌株，源自南非医院污水。
Draft Genome Sequence of Providencia rettgeri APW139_S1, an NDM-18-Producing Clinical Strain Originating from Hospital Effluent in South Africa.
作者信息
Ntshobeni Noyise B, Allam Mushal, Ismail Arshad, Amoako Daniel G, Essack Sabiha Y, Chenia Hafizah Y
机构信息
Discipline of Microbiology, College of Agriculture, Engineering and Science, University of KwaZulu-Natal, Durban, South Africa.
Sequencing Core Facility, National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg, South Africa.
出版信息
Microbiol Resour Announc. 2019 May 23;8(21):e00259-19. doi: 10.1128/MRA.00259-19.
Abstract
is an opportunistic pathogen implicated in various clinical infections. Here, we report the genome sequence of a strain isolated from hospital effluent in South Africa, which harbors the New Delhi metallo-β-lactamase (NDM) variant 18 gene ( ). The 4,835,047-bp genome encodes a resistome and virulome that are of cardinal importance to infections.
摘要
是一种与多种临床感染有关的机会致病菌。在此，我们报告了从南非医院污水中分离出的一株菌株的基因组序列，该菌株携带新德里金属β-内酰胺酶（NDM）变体18基因（ ）。这个4,835,047碱基对的基因组编码了对 感染至关重要的耐药基因组和毒力基因组。
相似文献
1
Draft Genome Sequence of Providencia rettgeri APW139_S1, an NDM-18-Producing Clinical Strain Originating from Hospital Effluent in South Africa.
Microbiol Resour Announc. 2019 May 23;8(21):e00259-19. doi: 10.1128/MRA.00259-19.
2
Occurrence of NDM-1, VIM-1, and OXA-10 Co-Producing Clinical Isolate in China.
Front Cell Infect Microbiol. 2022 Jan 3;11:789646. doi: 10.3389/fcimb.2021.789646. eCollection 2021.
3
Conjugation of plasmid harboring in a clinical strain through the formation of a fusion plasmid.
Front Microbiol. 2023 Jan 4;13:1071385. doi: 10.3389/fmicb.2022.1071385. eCollection 2022.
4
Draft Genome Sequence of a New Delhi Metallo-β-Lactamase (NDM-1)-Producing Providencia stuartii Strain Isolated in Lima, Peru.
Microbiol Resour Announc. 2020 Sep 24;9(39):e00788-20. doi: 10.1128/MRA.00788-20.
5
Epidemiological and molecular study of Providencia rettgeri outbreak at a university hospital during the COVID-19 reference center.
Int Microbiol. 2025 Jan;28(1):61-67. doi: 10.1007/s10123-024-00523-9. Epub 2024 Apr 30.
6
Genomic analysis of a multidrug-resistant clinical Providencia rettgeri (PR002) strain with the novel integron ln1483 and an A/C plasmid replicon.
Ann N Y Acad Sci. 2020 Feb;1462(1):92-103. doi: 10.1111/nyas.14237. Epub 2019 Sep 23.
7
First Complete Providencia rettgeri Genome Sequence, the NDM-1-Producing Clinical Strain RB151.
Genome Announc. 2017 Jan 19;5(3):e01472-16. doi: 10.1128/genomeA.01472-16.
8
Draft Genome Sequence of the First New Delhi Metallo-β-Lactamase (NDM-1)-Producing Escherichia coli Strain Isolated in Peru.
Genome Announc. 2018 Mar 29;6(13):e00199-18. doi: 10.1128/genomeA.00199-18.
9
Emergence of multidrug-resistant Providencia rettgeri isolates co-producing NDM-1 carbapenemase and PER-1 extended-spectrum β-lactamase causing a first outbreak in Korea.
Ann Clin Microbiol Antimicrob. 2018 May 5;17(1):20. doi: 10.1186/s12941-018-0272-y.
10
Pan-drug resistant contributing to a fatal case of COVID-19.
J Med Microbiol. 2021 Aug;70(8). doi: 10.1099/jmm.0.001406.
引用本文的文献
1
Emergence of multidrug-resistant clone in food-producing animals: A public health threat.
One Health. 2024 Sep 3;19:100887. doi: 10.1016/j.onehlt.2024.100887. eCollection 2024 Dec.
2
Emergence of Carbapenem-resistant Clinical Isolates of Species.
Juntendo Iji Zasshi. 2022 Jun 9;68(3):200-207. doi: 10.14789/jmj.JMJ21-0057-R. eCollection 2022.
3
Designing a Recombinant Vaccine against Using Immunoinformatics Approach.
Vaccines (Basel). 2022 Jan 25;10(2):189. doi: 10.3390/vaccines10020189.
4
Emergence of Carbapenem-Resistant Providencia rettgeri and Producing IMP-Type Metallo-β-Lactamase in Japan.
Antimicrob Agents Chemother. 2020 Oct 20;64(11). doi: 10.1128/AAC.00382-20.
本文引用的文献
1
NDM Metallo-β-Lactamases and Their Bacterial Producers in Health Care Settings.
Clin Microbiol Rev. 2019 Jan 30;32(2). doi: 10.1128/CMR.00115-18. Print 2019 Mar 20.
2
VFDB 2019: a comparative pathogenomic platform with an interactive web interface.
Nucleic Acids Res. 2019 Jan 8;47(D1):D687-D692. doi: 10.1093/nar/gky1080.
3
Diversity and Proliferation of Metallo-β-Lactamases: a Clarion Call for Clinically Effective Metallo-β-Lactamase Inhibitors.
Appl Environ Microbiol. 2018 Aug 31;84(18). doi: 10.1128/AEM.00698-18. Print 2018 Sep 15.
4
Genomic Epidemiology of NDM-1-Encoding Plasmids in Latin American Clinical Isolates Reveals Insights into the Evolution of Multidrug Resistance.
Genome Biol Evol. 2017 Jun 1;9(6):1725-1741. doi: 10.1093/gbe/evx115.
5
Outbreak of carbapenem-resistant Providencia rettgeri in a tertiary hospital.
S Afr Med J. 2016 Dec 21;107(1):31-33. doi: 10.7196/SAMJ.2016.v107.i1.12002.
6
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
Epidemiology and Virulence of Klebsiella pneumoniae.
Microbiol Spectr. 2016 Feb;4(1). doi: 10.1128/microbiolspec.UTI-0005-2012.
8
How bacterial pathogens colonize their hosts and invade deeper tissues.
Microbes Infect. 2015 Mar;17(3):173-83. doi: 10.1016/j.micinf.2015.01.004. Epub 2015 Jan 29.
9
Identification of acquired antimicrobial resistance genes.
J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10.
10
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. doi: 10.1093/nar/gkm360. Epub 2007 May 30.
Zotero 插件