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斯特夫基盐沼中的甲硫醇和二甲基硫循环

Methanethiol and Dimethylsulfide Cycling in Stiffkey Saltmarsh.

作者信息

Carrión Ornella, Pratscher Jennifer, Richa Kumari, Rostant Wayne G, Farhan Ul Haque Muhammad, Murrell J Colin, Todd Jonathan D

机构信息

School of Environmental Sciences, University of East Anglia, Norwich, United Kingdom.

The Lyell Centre, Heriot-Watt University, Edinburgh, United Kingdom.

出版信息

Front Microbiol. 2019 May 10;10:1040. doi: 10.3389/fmicb.2019.01040. eCollection 2019.

Abstract

Methanethiol (MeSH) and dimethylsulfide (DMS) are volatile organic sulfur compounds (VOSCs) with important roles in sulfur cycling, signaling and atmospheric chemistry. DMS can be produced from MeSH through a reaction mediated by the methyltransferase MddA. The gene is present in terrestrial and marine metagenomes, being most abundant in soil environments. The substrate for MddA, MeSH, can also be oxidized by bacteria with the MeSH oxidase (MTO) enzyme, encoded by the gene, found in marine, freshwater and soil metagenomes. Methanethiol-dependent DMS production (Mdd) pathways have been shown to function in soil and marine sediments, but have not been characterized in detail in the latter environments. In addition, few molecular studies have been conducted on MeSH consumption in the environment. Here, we performed process measurements to confirm that Mdd-dependent and Mdd-independent MeSH consumption pathways are active in tested surface saltmarsh sediment when MeSH is available. We noted that appreciable natural Mdd-independent MeSH and DMS consumption processes masked Mdd activity. 16S rRNA gene amplicon sequencing and metagenomics data showed that , a bacterial genus known to catabolise DMS and MeSH, was enriched by the presence of MeSH. Moreover, some MeSH and/or DMS-degrading bacteria isolated from this marine environment lacked known DMS and/or MeSH cycling genes and can be used as model organisms to potentially identify novel genes in these pathways. Thus, we are likely vastly underestimating the abundance of MeSH and DMS degraders in these marine sediment environments. The future discovery and characterization of novel enzymes involved in MeSH and/or DMS cycling is essential to better assess the role and contribution of microbes to global organosulfur cycling.

摘要

甲硫醇(MeSH)和二甲基硫醚(DMS)是挥发性有机硫化合物(VOSCs),在硫循环、信号传导和大气化学中发挥着重要作用。DMS可通过甲基转移酶MddA介导的反应由MeSH产生。该基因存在于陆地和海洋宏基因组中,在土壤环境中最为丰富。MddA的底物MeSH也可被由该基因编码的MeSH氧化酶(MTO)的细菌氧化,该基因存在于海洋、淡水和土壤宏基因组中。依赖甲硫醇的DMS产生(Mdd)途径已被证明在土壤和海洋沉积物中起作用,但在后者环境中尚未得到详细表征。此外,关于环境中甲硫醇消耗的分子研究很少。在这里,我们进行了过程测量,以确认当有MeSH时,依赖Mdd和不依赖Mdd的MeSH消耗途径在测试的表层盐沼沉积物中是活跃的。我们注意到,明显的天然不依赖Mdd的MeSH和DMS消耗过程掩盖了Mdd活性。16S rRNA基因扩增子测序和宏基因组学数据表明,已知能分解代谢DMS和MeSH的细菌属因MeSH的存在而富集。此外,从这种海洋环境中分离出的一些降解MeSH和/或DMS的细菌缺乏已知的DMS和/或MeSH循环基因,可作为模型生物来潜在地鉴定这些途径中的新基因。因此,我们可能大大低估了这些海洋沉积物环境中MeSH和DMS降解菌的丰度。未来发现和表征参与MeSH和/或DMS循环的新酶对于更好地评估微生物对全球有机硫循环的作用和贡献至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d067/6524544/0d5a2122cbc9/fmicb-10-01040-g001.jpg

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