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全基因组关联研究与下一代测序:额颞叶痴呆研究新可能前景的一线曙光。

Genome Wide Association Study and Next Generation Sequencing: A Glimmer of Light Toward New Possible Horizons in Frontotemporal Dementia Research.

作者信息

Ciani Miriam, Benussi Luisa, Bonvicini Cristian, Ghidoni Roberta

机构信息

Molecular Markers Laboratory, IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.

Department of Molecular and Translational Medicine, University of Brescia, Brescia, Italy.

出版信息

Front Neurosci. 2019 May 16;13:506. doi: 10.3389/fnins.2019.00506. eCollection 2019.

Abstract

Frontotemporal Dementia (FTD) is a focal neurodegenerative disease, with a strong genetic background, that causes early onset dementia. The present knowledge about the risk loci and causative mutations of FTD mainly derives from genetic linkage analysis, studies of candidate genes, Genome-Wide Association Studies (GWAS) and Next-Generation Sequencing (NGS) applications. In this review, we report recent insights into the genetics of FTD, and, specifically, the results achieved thanks to GWAS and NGS approaches. Linkage studies of large FTD pedigrees have prompted the identification of causal mutations in different genes: mutations in , , and genes explain the large majority of cases with a high family history of the disease. In cases with a less clear inheritance, GWAS and NGS have contributed to further understand the genetic picture of FTD. GWAS identified several common genetic variants with a modest risk effect. Of interest, many of these variants are in genes belonging to the endo-lysosomal pathway, the immune response and neuronal survival. On the opposite, the NGS approach allowed the identification of rare variants with a strong risk effect. These variants were identified in known FTD-associated genes and again in genes involved in the endo-lysosomal pathway and in the immune response. Interestingly, both approaches demonstrated that several genes are associated to multiple neurodegenerative disorders including FTD. Thanks to these complementary approaches, the genetic picture of FTD is becoming more clear and novel key molecular processes are emerging. This will foster opportunities to move toward prevention and therapy for this incurable disease.

摘要

额颞叶痴呆(FTD)是一种具有强烈遗传背景的局灶性神经退行性疾病,可导致早发性痴呆。目前关于FTD风险位点和致病突变的知识主要来自遗传连锁分析、候选基因研究、全基因组关联研究(GWAS)和下一代测序(NGS)应用。在本综述中,我们报告了对FTD遗传学的最新见解,特别是通过GWAS和NGS方法取得的结果。对大型FTD家系的连锁研究促使人们在不同基因中鉴定出致病突变: 、 和 基因中的突变解释了大多数有该疾病高家族史的病例。在遗传情况不太明确的病例中,GWAS和NGS有助于进一步了解FTD的遗传情况。GWAS鉴定出了几种具有适度风险效应的常见遗传变异。有趣的是,其中许多变异存在于属于内溶酶体途径、免疫反应和神经元存活相关的基因中。相反,NGS方法能够鉴定出具有强烈风险效应的罕见变异。这些变异在已知的FTD相关基因中被鉴定出来,并且再次出现在参与内溶酶体途径和免疫反应的基因中。有趣的是,两种方法都表明,有几个基因与包括FTD在内的多种神经退行性疾病相关。由于这些互补的方法,FTD的遗传情况正变得更加清晰,新的关键分子过程正在出现。这将为针对这种不治之症的预防和治疗带来机会。

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