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论核糖体RNA的进化

On the evolution of ribosomal RNA.

作者信息

Clark C G

机构信息

Laboratory of Molecular Parasitology, Rockefeller University, New York, New York 10021-6399.

出版信息

J Mol Evol. 1987;25(4):343-50. doi: 10.1007/BF02603119.

DOI:10.1007/BF02603119
PMID:3118048
Abstract

Despite the availability of a rapidly growing ribosomal RNA database that now includes organisms in all three primary lines of descent (eubacteria, archaebacteria, and eukaryotes), theoretical treatment of the evolution of the ribosomal RNAs has lagged behind that of the protein genes. In this paper a theory is developed that applies current views of protein gene evolution to the ribosomal RNAs. The major topics addressed are the variability in size, gene arrangement, and processing of the rRNAs among the three primary lines of descent. Among the conclusions are that the rRNAs of eukaryotes retain some primitive features that were probably present in the rRNAs of the earliest cell (the progenote) and that the genes coding for the three major rRNA species were probably originally unlinked.

摘要

尽管核糖体RNA数据库正在迅速增长,目前已涵盖了所有三个主要进化谱系(真细菌、古细菌和真核生物)中的生物,但核糖体RNA进化的理论研究仍落后于蛋白质基因。本文提出了一种理论,将当前蛋白质基因进化的观点应用于核糖体RNA。所讨论的主要主题是三个主要进化谱系中rRNA在大小、基因排列和加工方面的变异性。得出的结论包括:真核生物的rRNA保留了一些可能存在于最早细胞(原祖细胞)的rRNA中的原始特征,并且编码三种主要rRNA种类的基因最初可能是不相连的。

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On the evolution of ribosomal RNA.论核糖体RNA的进化
J Mol Evol. 1987;25(4):343-50. doi: 10.1007/BF02603119.
2
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本文引用的文献

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Unusual organization and lack of recombination in the ribosomal RNA genes of Coprinus cinereus.灰盖鬼伞的核糖体 RNA 基因的不寻常组织和缺乏重组。
Curr Genet. 1984 Oct;8(8):607-13. doi: 10.1007/BF00395706.
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Partial Sequence Analysis of the 5S to 18S rRNA Gene Region of the Maize Mitochondrial Genome.玉米线粒体基因组 5S 至 18S rRNA 基因区的部分序列分析。
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Organization of rRNA structural genes in the archaebacterium Thermoplasma acidophilum.嗜热嗜酸栖热菌中古细菌核糖体RNA结构基因的组织方式
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New Comparative Analysis Based on the Secondary Structure of SSU-rRNA Gene Reveals the Evolutionary Trend and the Family-Genus Characters of Mobilida (Ciliophora, Peritrichia).基于小亚基核糖体RNA基因二级结构的新比较分析揭示了动基目(纤毛门,缘毛亚纲)的进化趋势和科级特征。
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Evolving wonder-RNAs in a test tube.
J Mol Evol. 2013 Dec;77(5-6):197-8. doi: 10.1007/s00239-013-9595-7. Epub 2013 Nov 16.
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Origin and evolution of the ribosome.核糖体的起源与进化。
Cold Spring Harb Perspect Biol. 2010 Sep;2(9):a003483. doi: 10.1101/cshperspect.a003483. Epub 2010 Jun 9.
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Ribosome origins: the relative age of 23S rRNA Domains.核糖体起源:23S核糖体RNA结构域的相对年代
Orig Life Evol Biosph. 2006 Aug;36(4):421-9. doi: 10.1007/s11084-006-9011-z. Epub 2006 Sep 14.
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A possible tertiary rRNA interaction between expansion segments ES3 and ES6 in eukaryotic 40S ribosomal subunits.真核生物40S核糖体亚基中扩展片段ES3和ES6之间可能存在的三级rRNA相互作用。
RNA. 2003 Jan;9(1):20-4. doi: 10.1261/rna.2108203.
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Tracing the evolution of RNA structure in ribosomes.追踪核糖体中RNA结构的演变。
Nucleic Acids Res. 2002 Jun 1;30(11):2575-87. doi: 10.1093/nar/30.11.2575.
10
Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA.核糖体RNA三级结构中替换率的分布及插入位点的位置
Nucleic Acids Res. 2001 Dec 15;29(24):5017-28. doi: 10.1093/nar/29.24.5017.
Nucleic Acids Res. 1982 Nov 25;10(22):7231-45. doi: 10.1093/nar/10.22.7231.
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Ribosomal RNA evolution by fragmentation of the 23S progenitor: maturation pathway parallels evolutionary emergence.核糖体RNA通过23S前体片段化的进化:成熟途径与进化出现平行。
J Mol Evol. 1982;18(5):329-36. doi: 10.1007/BF01733899.
5
The rRNA operon from Zea mays chloroplasts: nucleotide sequence of 23S rDNA and its homology with E.coli 23S rDNA.玉米叶绿体的核糖体RNA操纵子:23S核糖体DNA的核苷酸序列及其与大肠杆菌23S核糖体DNA的同源性。
Nucleic Acids Res. 1981 Jun 25;9(12):2853-69. doi: 10.1093/nar/9.12.2853.
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Composite structure of the chloroplast 23 S ribosomal RNA genes of Chlamydomonas reinhardii. Evolutionary and functional implications.莱茵衣藻叶绿体23S核糖体RNA基因的复合结构。进化与功能意义。
J Mol Biol. 1982 Aug 15;159(3):383-95. doi: 10.1016/0022-2836(82)90290-x.
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