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一种冷活性 N-乙酰神经氨酸裂解酶的特性和结构。

Features and structure of a cold active N-acetylneuraminate lyase.

机构信息

The Norwegian Structural Biology Center (NorStruct), Department of Chemistry, UiT- The Arctic University of Norway, Tromsø, Norway.

出版信息

PLoS One. 2019 Jun 11;14(6):e0217713. doi: 10.1371/journal.pone.0217713. eCollection 2019.

DOI:10.1371/journal.pone.0217713
PMID:31185017
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6559660/
Abstract

N-acetylneuraminate lyases (NALs) are enzymes that catalyze the reversible cleavage and synthesis of sialic acids. They are therefore commonly used for the production of these high-value sugars. This study presents the recombinant production, together with biochemical and structural data, of the NAL from the psychrophilic bacterium Aliivibrio salmonicida LFI1238 (AsNAL). Our characterization shows that AsNAL possesses high activity and stability at alkaline pH. We confirm that these properties allow for the use in a one-pot reaction at alkaline pH for the synthesis of N-acetylneuraminic acid (Neu5Ac, the most common sialic acid) from the inexpensive precursor N-acetylglucosamine. We also show that the enzyme has a cold active nature with an optimum temperature for Neu5Ac synthesis at 20°C. The equilibrium constant for the reaction was calculated at different temperatures, and the formation of Neu5Ac acid is favored at low temperatures, making the cold active enzyme a well-suited candidate for use in such exothermic reactions. The specific activity is high compared to the homologue from Escherichia coli at three tested temperatures, and the enzyme shows a higher catalytic efficiency and turnover number for cleavage at 37°C. Mutational studies reveal that amino acid residue Asn 168 is important for the high kcat. The crystal structure of AsNAL was solved to 1.65 Å resolution and reveals a compact, tetrameric protein similar to other NAL structures. The data presented provides a framework to guide further optimization of its application in sialic acid production and opens the possibility for further design of the enzyme.

摘要

N-乙酰神经氨酸裂解酶(NALs)是一种能够催化唾液酸可逆裂解和合成的酶。因此,它们通常被用于这些高价值糖的生产。本研究介绍了嗜冷菌 Aliivibrio salmonicida LFI1238(AsNAL)的 NAL 的重组生产,以及生物化学和结构数据。我们的特性研究表明,AsNAL 在碱性 pH 下具有高活性和稳定性。我们证实,这些特性允许在碱性 pH 下的一锅反应中使用,从廉价的前体 N-乙酰氨基葡萄糖合成 N-乙酰神经氨酸(Neu5Ac,最常见的唾液酸)。我们还表明,该酶具有冷活性,其 Neu5Ac 合成的最适温度为 20°C。在不同温度下计算了反应的平衡常数,并且 Neu5Ac 酸的形成在低温下有利,使得冷活性酶成为此类放热反应的理想候选酶。与在三个测试温度下的大肠杆菌同源物相比,该酶的比活性很高,并且在 37°C 下对裂解具有更高的催化效率和周转率。突变研究表明,氨基酸残基 Asn 168 对高 kcat 很重要。AsNAL 的晶体结构解析至 1.65 Å 分辨率,揭示了一种类似于其他 NAL 结构的紧凑四聚体蛋白。所提供的数据为进一步优化其在唾液酸生产中的应用提供了框架,并为进一步设计该酶开辟了可能性。

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本文引用的文献

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Mar Drugs. 2018 Mar 5;16(3):80. doi: 10.3390/md16030080.
2
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Sci Rep. 2015 Mar 23;5:9341. doi: 10.1038/srep09341.
3
First functional and mutational analysis of group 3 N-acetylneuraminate lyases from Lactobacillus antri and Lactobacillus sakei 23K.
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PLoS One. 2014 May 9;9(5):e96976. doi: 10.1371/journal.pone.0096976. eCollection 2014.
4
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ACS Chem Biol. 2014 Apr 18;9(4):1025-32. doi: 10.1021/cb500067z. Epub 2014 Feb 21.
5
Structural basis for substrate specificity and mechanism of N-acetyl-D-neuraminic acid lyase from Pasteurella multocida.多杀巴斯德氏菌 N-乙酰-D-神经氨酸裂解酶的底物特异性和机制的结构基础。
Biochemistry. 2013 Nov 26;52(47):8570-9. doi: 10.1021/bi4011754. Epub 2013 Nov 11.
6
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