Yao Qiucui, Yu Kefu, Liang Jiayuan, Wang Yinghui, Hu Baoqing, Huang Xueyong, Chen Biao, Qin Zhenjun
Coral Reef Research Center of China, Guangxi University, Nanning, China.
Guangxi Laboratory on the Study of Coral Reefs in the South China Sea, Guangxi University, Nanning, China.
Front Microbiol. 2019 May 28;10:1168. doi: 10.3389/fmicb.2019.01168. eCollection 2019.
Sea urchins strongly affect reef ecology, and the bacteria associated with their gut digesta have not been well studied in coral reefs. In the current study, we analyze the bacterial composition of five sea urchin species collected from Luhuitou fringing reef, namely , , , , and , using high-throughput 16S rRNA gene-based pyrosequencing. , , and were found to be the dominant bacterial genera in all five species. Interestingly, four sea urchin species, including , , , and , displayed a higher mean total abundance of the three bacterial genera (69.72 ± 6.49%) than (43.37 ± 13.47%). Diversity analysis indicated that the gut digesta of sea urchin displayed a higher bacterial α-diversity compared with the other four species. PCoA showed that the four groups representing , , , and were overlapping, but distant from the group representing . Predictive metagenomics performed by PICRUSt revealed that the abundances of genes involved in amino acid metabolism and metabolism of terpenoid and polyketide were higher in , while those involved in carbohydrate metabolism were higher in the other four sea urchin species. Therefore, our results indicated that the composition, diversity and predictive metabolic profiles of bacteria associated with the gut digesta of were significantly different from those of the other four sea urchin species in Luhuitou fringing reef.
海胆对珊瑚礁生态有着强烈影响,而与其肠道消化物相关的细菌在珊瑚礁中尚未得到充分研究。在本研究中,我们使用基于高通量16S rRNA基因的焦磷酸测序技术,分析了从鹿回头岸礁采集的五种海胆物种(即 、 、 、 和 )的细菌组成。 、 和 被发现是所有五个物种中的优势细菌属。有趣的是,包括 、 、 和 在内的四种海胆物种,这三个细菌属的平均总丰度(69.72 ± 6.49%)高于 (43.37 ± 13.47%)。多样性分析表明,与其他四个物种相比,海胆 的肠道消化物显示出更高的细菌α多样性。主坐标分析(PCoA)显示,代表 、 、 和 的四组相互重叠,但与代表 的组距离较远。通过PICRUSt进行的预测宏基因组学分析表明,参与氨基酸代谢以及萜类和聚酮化合物代谢的基因丰度在 中较高,而参与碳水化合物代谢的基因丰度在其他四种海胆物种中较高。因此,我们的结果表明,与鹿回头岸礁其他四种海胆物种相比, 肠道消化物相关细菌的组成、多样性和预测代谢谱存在显著差异。