Center for Personalized Cancer Therapy and Division of Hematology and Oncology, University of California San Diego, Moores Cancer Center, La Jolla, CA.
Int J Cancer. 2020 Jan 15;146(2):566-576. doi: 10.1002/ijc.32510. Epub 2019 Jul 1.
We investigated the impact of time interval, primary vs. metastatic biopsy site, variant allele fraction (VAF) and histology on concordance of KRAS alterations in tissue vs. circulating tumor DNA (ctDNA), and association of concordance with survival. Blood and tissue were evaluated by next-generation sequencing in 433 patients with diverse cancers. Altogether, 101 patients (23.3%) had KRAS alterations: 56, ctDNA (12.9%); 81, tissue (18.7%); and 36, both (8.3%). The overall blood and tissue concordance rate for KRAS alterations was 85%, but was mainly driven by the large negative/negative subset. Therefore, specificity of one test for the other was high (88.1-94.3%), while sensitivity was not high (44.4-64.3%) and was lower still in patients with >6 vs. ≤2 months between blood and tissue sampling (31.0-40.9% vs. 51.2-84.0%; p = 0.14 time interval-dependent sensitivity of blood for tissue; p = 0.003, tissue for blood). Positive concordance rate for KRAS alterations was 57.1% vs. 27.4% (colorectal vs. noncolorectal cancer; p = 0.01), but site of biopsy (primary vs. metastatic) and VAF (%ctDNA) was not impactful. The presence of KRAS alterations in both tests was independently associated with shorter survival from diagnosis (hazard ratio, 1.72; 95% confidence interval, 1.04-2.86) and from recurrent/metastatic disease (1.70; 1.03-2.81). Positive concordance of KRAS alterations between ctDNA and tissue was negatively affected by a longer time period between blood and tissue sampling and was higher in colorectal cancer than in other malignancies. The presence of KRAS alterations in both tests was an independent prognostic factor for poor survival.
我们研究了时间间隔、原发与转移活检部位、变异等位基因分数(VAF)和组织学对组织与循环肿瘤 DNA(ctDNA)中 KRAS 改变一致性的影响,以及一致性与生存的相关性。在 433 名患有各种癌症的患者中,通过下一代测序评估了血液和组织。共有 101 名患者(23.3%)存在 KRAS 改变:56 名患者 ctDNA(12.9%);81 名患者组织(18.7%);36 名患者两者均有(8.3%)。KRAS 改变的血液和组织总体一致性率为 85%,但主要由大量阴性/阴性亚组驱动。因此,一种检测对另一种检测的特异性很高(88.1-94.3%),而敏感性不高(44.4-64.3%),在血液和组织采样之间的时间间隔>6 个月与≤2 个月的患者中更低(31.0-40.9%与 51.2-84.0%;p=0.14 时间间隔依赖性血液对组织的敏感性;p=0.003,组织对血液)。KRAS 改变的阳性一致性率为 57.1% vs. 27.4%(结直肠癌与非结直肠癌;p=0.01),但活检部位(原发与转移)和 VAF(%ctDNA)无影响。两种检测中均存在 KRAS 改变与从诊断开始(危险比,1.72;95%置信区间,1.04-2.86)和从复发性/转移性疾病开始(1.70;1.03-2.81)的生存时间较短独立相关。ctDNA 和组织中 KRAS 改变的阳性一致性受血液和组织采样之间时间间隔延长的负面影响,在结直肠癌中高于其他恶性肿瘤。两种检测中均存在 KRAS 改变是生存不良的独立预后因素。