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本文引用的文献

1
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
2
Characterization of the stability and dynamics of Tn6330 in an Escherichia coli strain by nanopore long reads.利用纳米孔长读序列对大肠杆菌中 Tn6330 的稳定性和动力学特征进行分析。
J Antimicrob Chemother. 2019 Jul 1;74(7):1807-1811. doi: 10.1093/jac/dkz117.
3
Identification of a novel hybrid plasmid coproducing MCR-1 and MCR-3 variant from an Escherichia coli strain.从一株大肠杆菌中鉴定出一种同时产生 MCR-1 和 MCR-3 变体的新型杂合质粒。
J Antimicrob Chemother. 2019 Jun 1;74(6):1517-1520. doi: 10.1093/jac/dkz058.
4
Emergence of a novel mobile colistin resistance gene, mcr-8, in NDM-producing Klebsiella pneumoniae.产新德里金属β-内酰胺酶(NDM)肺炎克雷伯菌中新型可移动黏菌素耐药基因 mcr-8 的出现。
Emerg Microbes Infect. 2018 Jul 4;7(1):122. doi: 10.1038/s41426-018-0124-z.
5
Colocation of the Polymyxin Resistance Gene and a Variant of on a Plasmid in an Escherichia coli Isolate from a Chicken Farm.在鸡场分离的大肠杆菌中,多粘菌素耐药基因与质粒上的一个变体共存。
Antimicrob Agents Chemother. 2018 May 25;62(6). doi: 10.1128/AAC.00501-18. Print 2018 Jun.
6
Potential transferability of mcr-3 via IS26-mediated homologous recombination in Escherichia coli.mcr-3通过IS26介导的同源重组在大肠杆菌中的潜在转移性。
Emerg Microbes Infect. 2018 Apr 4;7(1):55. doi: 10.1038/s41426-018-0057-6.
7
The Birth and Demise of the IS--IS Composite Transposon: the Vehicle for Transferable Colistin Resistance.IS--IS 复合转座子的诞生与消亡:可转移多粘菌素耐药性的载体。
mBio. 2018 Feb 13;9(1):e02381-17. doi: 10.1128/mBio.02381-17.
8
Efficient generation of complete sequences of MDR-encoding plasmids by rapid assembly of MinION barcoding sequencing data.通过快速组装 MinION 条形码测序数据,高效生成完整的 MDR 编码质粒序列。
Gigascience. 2018 Mar 1;7(3):1-9. doi: 10.1093/gigascience/gix132.
9
Genetic basis of chromosomally-encoded mcr-1 gene.mcr-1 基因的染色体编码遗传基础。
Int J Antimicrob Agents. 2018 Apr;51(4):578-585. doi: 10.1016/j.ijantimicag.2017.11.015. Epub 2017 Nov 29.
10
Co-occurrence of colistin-resistance genes mcr-1 and mcr-3 among multidrug-resistant Escherichia coli isolated from cattle, Spain, September 2015.2015年9月在西班牙从牛身上分离出的多重耐药性大肠杆菌中耐黏菌素基因mcr-1和mcr-3的共现情况。
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质粒消除和插入序列介导的基因丢失

Loss of Genes Mediated by Plasmid Elimination and IS.

机构信息

Guangdong Provincial Key Laboratory of Food, Nutrition and Health, Department of Nutrition, School of Public Health, Sun Yat-Sen University, Guangzhou, People's Republic of China.

Key Laboratory of Food Safety Risk Assessment, National Health Commission of the People's Republic of China, China National Center for Food Safety Risk Assessment, Beijing, People's Republic of China.

出版信息

Antimicrob Agents Chemother. 2019 Aug 23;63(9). doi: 10.1128/AAC.01002-19. Print 2019 Sep.

DOI:10.1128/AAC.01002-19
PMID:31209010
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6709468/
Abstract

We characterized the stability of a plasmid pCP53-mcr1_3 encoding and with and without colistin exposure during cultural passages via S1-pulsed-field gel electrophoresis (PFGE) and nanopore MinION sequencing. Both and were missing in certain subclones, mediated by genetic excision (IS), and deletions of large multidrug resistance (MDR) regions confirmed by IS and plasmid elimination. Without colistin exposure, the eradication of genes is feasible, while the factors influencing the elimination processes warrant further study.

摘要

我们通过 S1 脉冲场凝胶电泳(PFGE)和纳米孔 MinION 测序来表征携带 mcr-1_3 基因和/或经多轮传代后质粒稳定性。遗传切除(IS)介导的特定亚克隆中缺失 和 ,且大的多重耐药(MDR)区域缺失通过 IS 和质粒消除得以证实。未经多粘菌素暴露, 基因消除是可行的,而影响消除过程的因素则需要进一步研究。