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光照对附着型和自由生活型海洋细菌利用颗粒有机物的影响。

Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria.

作者信息

Gómez-Consarnau Laura, Needham David M, Weber Peter K, Fuhrman Jed A, Mayali Xavier

机构信息

Departamento de Oceanografía Biológica, Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE), Ensenada, Mexico.

Department of Biological Sciences, University of Southern California, Los Angeles, CA, United States.

出版信息

Front Microbiol. 2019 Jun 4;10:1204. doi: 10.3389/fmicb.2019.01204. eCollection 2019.

Abstract

Light plays a central role on primary productivity of aquatic systems. Yet, its potential impact on the degradation of photosynthetically produced biomass is not well understood. We investigated the patterns of light-induced particle breakdown and bacterial assimilation of detrital C and N using C and N labeled freeze-thawed diatom cells incubated in laboratory microcosms with a marine microbial community freshly collected from the Pacific Ocean. Particles incubated in the dark resulted in increased bacterial counts and dissolved organic carbon concentrations compared to those incubated in the light. Light also influenced the attached and free-living microbial community structure as detected by 16S rRNA gene amplicon sequencing. For example, Sphingobacteriia were enriched on dark-incubated particles and taxa from the family Flavobacteriaceae and the genus were numerically enriched on particles in the light. Isotope incorporation analysis by phylogenetic microarray and NanoSIMS (a method called Chip-SIP) identified free-living and attached microbial taxa able to incorporate N and C from the particles. Some taxa, including members of the Flavobacteriaceae and Cryomorphaceae, exhibited increased isotope incorporation in the light, suggesting the use of photoheterotrophic metabolisms. In contrast, some members of Oceanospirillales and Rhodospirillales showed decreased isotope incorporation in the light, suggesting that their heterotrophic metabolism, particularly when occurring on particles, might increase at night or may be inhibited by sunlight. These results show that light influences particle degradation and C and N incorporation by attached bacteria, suggesting that the transfer between particulate and free-living phases are likely affected by external factors that change with the light regime, such as time of day, water column depth and season.

摘要

光在水生系统的初级生产力中起着核心作用。然而,其对光合产生的生物量降解的潜在影响尚未得到充分理解。我们使用从太平洋新鲜采集的海洋微生物群落,在实验室微宇宙中培养经碳和氮标记的冻融硅藻细胞,研究了光诱导的颗粒分解以及碎屑碳和氮的细菌同化模式。与在光照下培养的颗粒相比,在黑暗中培养的颗粒导致细菌数量增加和溶解有机碳浓度升高。如通过16S rRNA基因扩增子测序所检测到的,光也影响附着和自由生活的微生物群落结构。例如,鞘脂杆菌纲在黑暗培养的颗粒上富集,而黄杆菌科和某个属的分类单元在光照下的颗粒上数量上富集。通过系统发育微阵列和纳米二次离子质谱(一种称为芯片-SIP的方法)进行的同位素掺入分析确定了能够从颗粒中掺入氮和碳的自由生活和附着的微生物分类单元。一些分类单元,包括黄杆菌科和低温菌科的成员,在光照下表现出增加的同位素掺入,表明利用了光能异养代谢。相比之下,海洋螺菌目和红螺菌目的一些成员在光照下表现出减少的同位素掺入,表明它们的异养代谢,特别是在颗粒上发生时,可能在夜间增加或可能受到阳光抑制。这些结果表明,光影响颗粒降解以及附着细菌对碳和氮的掺入,表明颗粒相和自由生活相之间的转移可能受到随光照条件变化的外部因素的影响,如一天中的时间、水柱深度和季节。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9959/6558058/82073ef04e3e/fmicb-10-01204-g001.jpg

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