De Geyter Jozefien, Smets Dries, Karamanou Spyridoula, Economou Anastassios
Laboratory of Molecular Bacteriology, Department of Microbiology and Immunology, Rega Institute for Medical Research, KU Leuven - University of Leuven, Herestraat 49, 3000, Leuven, Belgium.
Subcell Biochem. 2019;92:337-366. doi: 10.1007/978-3-030-18768-2_11.
The inner membrane of Gram-negative bacteria is a ~6 nm thick phospholipid bilayer. It forms a semi-permeable barrier between the cytoplasm and periplasm allowing only regulated export and import of ions, sugar polymers, DNA and proteins. Inner membrane proteins, embedded via hydrophobic transmembrane α-helices, play an essential role in this regulated trafficking: they mediate insertion into the membrane (insertases) or complete crossing of the membrane (translocases) or both. The Gram-negative inner membrane is equipped with a variety of different insertases and translocases. Many of them are specialized, taking care of the export of only a few protein substrates, while others have more general roles. Here, we focus on the three general export/insertion pathways, the secretory (Sec) pathway, YidC and the twin-arginine translocation (TAT) pathway, focusing closely on the Escherichia coli (E. coli) paradigm. We only briefly mention dedicated export pathways found in different Gram-negative bacteria. The Sec system deals with the majority of exported proteins and functions both as a translocase for secretory proteins and an insertase for membrane proteins. The insertase YidC assists the Sec system or operates independently on membrane protein clients. Sec and YidC, in common with most export pathways, require their protein clients to be in soluble non-folded states to fit through the translocation channels and grooves. The TAT pathway is an exception, as it translocates folded proteins, some loaded with prosthetic groups.
革兰氏阴性菌的内膜是一层约6纳米厚的磷脂双分子层。它在细胞质和周质之间形成了一个半透性屏障,只允许离子、糖聚合物、DNA和蛋白质进行有调控的进出。通过疏水跨膜α螺旋嵌入的内膜蛋白在这种有调控的运输过程中起着至关重要的作用:它们介导蛋白插入膜内(插入酶)或完全穿过膜(转位酶),或两者兼具。革兰氏阴性菌的内膜配备了多种不同的插入酶和转位酶。其中许多是专门化的,只负责少数几种蛋白质底物的输出,而其他的则具有更广泛的作用。在这里,我们重点关注三种通用的输出/插入途径,即分泌(Sec)途径、YidC和双精氨酸转运(TAT)途径,特别关注大肠杆菌这一范例。我们只简要提及在不同革兰氏阴性菌中发现的特定输出途径。Sec系统处理大多数输出的蛋白质,既作为分泌蛋白的转位酶,又作为膜蛋白的插入酶。插入酶YidC协助Sec系统,或独立作用于膜蛋白底物。与大多数输出途径一样,Sec和YidC要求其蛋白质底物处于可溶的未折叠状态,以便通过转运通道和凹槽。TAT途径是个例外,因为它转运折叠的蛋白质, 其中一些还负载着辅基。