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大黄素对 HepG2 细胞的抗癌作用:来自生物信息学分析的证据。

Anticancer Effects of Emodin on HepG2 Cell: Evidence from Bioinformatic Analysis.

机构信息

The First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou University of Chinese Medicine, Guangzhou, China.

Guangzhou University of Chinese Medicine, Guangzhou, China.

出版信息

Biomed Res Int. 2019 May 19;2019:3065818. doi: 10.1155/2019/3065818. eCollection 2019.

Abstract

Hepatocellular carcinoma (HCC) is a primary cause of cancer-related death in the world. Despite the fact that there are many methods to treat HCC, the 5-year survival rate of HCC is still at a low level. Emodin can inhibit the growth of HCC cells in and in . However, the gene regulation of emodin in HCC has not been well studied. In our research, RNA sequencing technology was used to identify the differentially expressed genes (DEGs) in HepG2 cells induced by emodin. A total of 859 DEGs were identified, including 712 downregulated genes and 147 upregulated genes in HepG2 cells treated with emodin. We used DAVID for function and pathway enrichment analysis. The protein-protein interaction (PPI) network was constructed using STRING, and Cytoscape was used for module analysis. The enriched functions and pathways of the DEGs include positive regulation of apoptotic process, structural molecule activity and lipopolysaccharide binding, protein digestion and absorption, ECM-receptor interaction, complement and coagulation cascades, and MAPK signaling pathway. 25 hub genes were identified and pathway analysis revealed that these genes were mainly enriched in neuropeptide signaling pathway, inflammatory response, and positive regulation of cytosolic calcium ion concentration. Survival analysis showed that LPAR6, C5, SSTR5, GPR68, and P2RY4 may be involved in the molecular mechanisms of emodin therapy for HCC. A quantitative real-time PCR (qRT-PCR) assay showed that the mRNA levels of LPAR6, C5, SSTR5, GPR68, and P2RY4 were significantly decreased in HepG2 cells treated with emodin. In conclusion, the identified DEGs and hub genes in the present study provide new clues for further researches on the molecular mechanisms of emodin.

摘要

肝细胞癌 (HCC) 是全球癌症相关死亡的主要原因。尽管有许多方法可以治疗 HCC,但 HCC 的 5 年生存率仍然很低。大黄素可以抑制 和 中的 HCC 细胞生长。然而,大黄素在 HCC 中的基因调控尚未得到很好的研究。在我们的研究中,使用 RNA 测序技术来鉴定大黄素诱导的 HepG2 细胞中的差异表达基因 (DEGs)。共鉴定出 859 个 DEGs,包括大黄素处理的 HepG2 细胞中 712 个下调基因和 147 个上调基因。我们使用 DAVID 进行功能和通路富集分析。使用 STRING 构建蛋白质-蛋白质相互作用 (PPI) 网络,并使用 Cytoscape 进行模块分析。DEGs 的富集功能和通路包括凋亡过程的正调控、结构分子活性和脂多糖结合、蛋白质消化和吸收、ECM-受体相互作用、补体和凝血级联以及 MAPK 信号通路。鉴定出 25 个枢纽基因,通路分析表明这些基因主要富集在神经肽信号通路、炎症反应和细胞质钙离子浓度的正调控中。生存分析表明,LPAR6、C5、SSTR5、GPR68 和 P2RY4 可能参与了大黄素治疗 HCC 的分子机制。实时荧光定量 PCR (qRT-PCR) 检测表明,大黄素处理的 HepG2 细胞中 LPAR6、C5、SSTR5、GPR68 和 P2RY4 的 mRNA 水平显著降低。总之,本研究中鉴定的 DEGs 和枢纽基因为进一步研究大黄素的分子机制提供了新线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e55a/6545785/3bdd9317f397/BMRI2019-3065818.001.jpg

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