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切萨皮克湾副溶血性弧菌:滞后水质测量数据的纳入能使运营预测和预报模型受益。

Vibrio parahaemolyticus in the Chesapeake Bay: Operational Prediction and Forecast Models Can Benefit from Inclusion of Lagged Water Quality Measurements.

机构信息

Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, USA

Spatial Science for Public Health Center, Johns Hopkins University, Baltimore, Maryland, USA.

出版信息

Appl Environ Microbiol. 2019 Aug 14;85(17). doi: 10.1128/AEM.01007-19. Print 2019 Sep 1.

Abstract

is a leading cause of seafood-borne gastroenteritis. Given its natural presence in brackish waters, there is a need to develop operational forecast models that can sufficiently predict the bacterium's spatial and temporal variation. This work attempted to develop prediction models using frequently measured time-indexed and -lagged water quality measures. Models were built using a large data set ( = 1,043) of surface water samples from 2007 to 2010 previously analyzed for in the Chesapeake Bay. Water quality variables were classified as time indexed, 1-month lag, and 2-month lag. Tobit regression models were used to account for measures below the limit of quantification and to simultaneously estimate the presence and abundance of the bacterium. Models were evaluated using cross-validation and metrics that quantify prediction bias and uncertainty. Presence classification models containing only one type of water quality parameter (e.g., temperature) performed poorly, while models with additional water quality parameters (i.e., salinity, clarity, and dissolved oxygen) performed well. Lagged variable models performed similarly to time-indexed models, and lagged variables occasionally contained a predictive power that was independent of or superior to that of time-indexed variables. Abundance estimation models were less effective, primarily due to a restricted number of samples with abundances above the limit of quantification. These findings indicate that an operational prediction model is attainable but will require a variety of water quality measurements and that lagged measurements will be particularly useful for forecasting. Future work will expand variable selection for prediction models and extend the spatial-temporal extent of predictions by using geostatistical interpolation techniques. is one of the leading causes of seafood-borne illness in the United States and across the globe. Exposure often occurs from the consumption of raw shellfish. Despite public health concerns, there have been only sporadic efforts to develop environmental prediction and forecast models for the bacterium preharvest. This analysis used commonly sampled water quality measurements of temperature, salinity, dissolved oxygen, and clarity to develop models for in surface water. Predictors also included measurements taken months before water was tested for the bacterium. Results revealed that the use of multiple water quality measurements is necessary for satisfactory prediction performance, challenging current efforts to manage the risk of infection based upon water temperature alone. The results also highlight the potential advantage of including historical water quality measurements. This analysis shows promise and lays the groundwork for future operational prediction and forecast models.

摘要

是食源性肠胃炎的主要致病因素之一。鉴于其在咸水中的自然存在,有必要开发能够充分预测细菌时空变化的作业预测模型。本研究尝试利用经常测量的时间索引和滞后水质测量值来建立预测模型。该模型是使用 2007 年至 2010 年期间从切萨皮克湾采集的大量(n=1043)地表水样本数据构建的,这些样本先前已对 进行了分析。水质变量分为时间索引、1 个月滞后和 2 个月滞后。Tobit 回归模型用于解释低于定量下限的测量值,并同时估计细菌的存在和丰度。通过交叉验证和度量标准评估模型,这些度量标准可量化预测偏差和不确定性。仅包含一种水质参数(例如温度)的存在分类模型表现不佳,而包含其他水质参数(即盐度、透明度和溶解氧)的模型表现良好。滞后变量模型的表现与时间索引模型相似,并且滞后变量偶尔包含独立于或优于时间索引变量的预测能力。丰度估计模型的效果较差,主要是由于定量上限以上的丰度样本数量有限。这些发现表明,虽然可以实现可作业的 预测模型,但需要各种水质测量值,并且滞后测量值对于预测将特别有用。未来的工作将通过使用地质统计学插值技术扩展预测模型的变量选择,并扩展预测的时空范围。是美国乃至全球食源性疾病的主要病因之一。暴露通常是由于食用生贝类引起的。尽管存在公共卫生问题,但在收获前,针对该细菌开发环境预测和预报模型的工作只是零星进行。本分析使用了温度、盐度、溶解氧和透明度等常见的水质测量值来建立地表水 模型。预测因子还包括在对细菌进行测试之前几个月进行的测量。结果表明,为了获得令人满意的预测性能,需要使用多种水质测量值,这对当前仅根据水温度来管理感染风险的努力构成了挑战。结果还突出了包含历史水质测量值的潜在优势。本分析具有一定的前景,并为未来的作业预测和预报模型奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e67/6696964/726f03583579/AEM.01007-19-f0003.jpg

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