Coll De Peña Adriana, Mohd Redzuan Nurul Humaira, Abajorga Milky K, Hill Nicole, Thomas Julie A, Lapizco-Encinas Blanca H
Microscale Bioseparations Laboratory and Biomedical Engineering Department, Rochester Institute of Technology, Rochester, NY 14623, USA.
Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, NY 14623, USA.
Micromachines (Basel). 2019 Jul 4;10(7):450. doi: 10.3390/mi10070450.
Bacterial viruses or phages have great potential in the medical and agricultural fields as alternatives to antibiotics to control nuisance populations of pathogenic bacteria. However, current analysis and purification protocols for phages tend to be resource intensive and have numbers of limitations, such as impacting phage viability. The present study explores the potential of employing the electrokinetic technique of insulator-based dielectrophoresis (iDEP) for virus assessment, separation and enrichment. In particular, the application of the parameter "trapping value" () is explored as a standardized iDEP signature for each phage species. The present study includes mathematical modeling with COMSOL Multiphysics and extensive experimentation. Three related, but genetically and structurally distinct, phages were studied: phage SPN3US, phage ϕKZ and phage 201ϕ2-1. This is the first iDEP study on bacteriophages with large and complex virions and the results illustrate their virions can be successfully enriched with iDEP systems and still retain infectivity. In addition, our results indicate that characterization of the negative dielectrophoretic response of a phage in terms of could be used for predicting individual virus behavior in iDEP systems. The findings reported here can contribute to the establishment of protocols to analyze, purify and/or enrich samples of known and unknown phages.
细菌病毒或噬菌体在医学和农业领域具有巨大潜力,可作为抗生素的替代品来控制病原菌的有害种群。然而,目前噬菌体的分析和纯化方案往往资源消耗大且存在诸多局限性,如影响噬菌体活力。本研究探索了采用基于绝缘体的介电电泳(iDEP)这一电动技术进行病毒评估、分离和富集的潜力。特别是,探讨了参数“捕获值”()作为每种噬菌体物种的标准化iDEP特征的应用。本研究包括使用COMSOL Multiphysics进行数学建模和广泛的实验。研究了三种相关但在遗传和结构上不同的噬菌体:噬菌体SPN3US、噬菌体ϕKZ和噬菌体201ϕ2 - 1。这是首次对具有大型和复杂病毒粒子的噬菌体进行iDEP研究,结果表明其病毒粒子可通过iDEP系统成功富集且仍保留感染力。此外,我们的结果表明,根据对噬菌体负介电泳响应的表征可用于预测iDEP系统中单个病毒的行为。此处报告的研究结果有助于建立分析、纯化和/或富集已知和未知噬菌体样本的方案。