Dong Liao-Bin, Liu Yu-Chen, Cepeda Alexis J, Kalkreuter Edward, Deng Ming-Rong, Rudolf Jeffrey D, Chang Changsoo, Joachimiak Andrzej, Phillips George N, Shen Ben
Midwest Center for Structural Genomics and Structural Biology Center, Biosciences Division , Argonne National Laboratory , Argonne , Illinois 60439 , United States.
Department of Biosciences , Rice University , Houston , Texas 77030 , United States.
J Am Chem Soc. 2019 Aug 7;141(31):12406-12412. doi: 10.1021/jacs.9b06183. Epub 2019 Jul 23.
Nonheme diiron monooxygenases make up a rapidly growing family of oxygenases that are rarely identified in secondary metabolism. Herein, we report the in vivo, in vitro, and structural characterizations of a nonheme diiron monooxygenase, PtmU3, that installs a C-5 β-hydroxyl group in the unified biosynthesis of platensimycin and platencin, two highly functionalized diterpenoids that act as potent and selective inhibitors of bacterial and mammalian fatty acid synthases. This hydroxylation sets the stage for the subsequent A-ring cleavage step key to the unique diterpene-derived scaffolds of platensimycin and platencin. PtmU3 adopts an unprecedented triosephosphate isomerase (TIM) barrel structural fold for this class of enzymes and possesses a noncanonical diiron active site architecture with a saturated six-coordinate iron center lacking a μ-oxo bridge. This study reveals the first member of a previously unidentified superfamily of TIM-barrel-fold enzymes for metal-dependent dioxygen activation, with the majority predicted to act on CoA-linked substrates, thus expanding our knowledge of nature's repertoire of nonheme diiron monooxygenases and TIM-barrel-fold enzymes.
非血红素双铁单加氧酶构成了一个快速增长的加氧酶家族,这类酶在次生代谢中很少被发现。在此,我们报道了一种非血红素双铁单加氧酶PtmU3的体内、体外及结构表征,该酶在扁平霉素和扁平菌素的统一生物合成过程中引入一个C-5β-羟基,这两种高度官能化的二萜类化合物是细菌和哺乳动物脂肪酸合酶的有效且选择性抑制剂。这种羟基化作用为随后的A环裂解步骤奠定了基础,该步骤是扁平霉素和扁平菌素独特的二萜衍生骨架的关键。PtmU3对于这类酶采用了一种前所未有的磷酸丙糖异构酶(TIM)桶状结构折叠,并且拥有一个非典型的双铁活性位点结构,其饱和六配位铁中心缺少一个μ-氧桥。这项研究揭示了一个此前未被鉴定的TIM桶状折叠酶超家族的首个成员,该超家族用于金属依赖性双加氧激活,预计大多数成员作用于与辅酶A相连的底物,从而扩展了我们对非血红素双铁单加氧酶和TIM桶状折叠酶天然库的认识。