BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Faculty of Sciences, Ghent University, K.L. Ledeganckstraat 35, B-9000 Ghent, Belgium.
Phibro Animal Health Corporation, Glenpointe Centre East, Frank W. Burr Blvd, Ste 21, Teaneck, NJ 07666, USA.
Int J Syst Evol Microbiol. 2019 Oct;69(10):3068-3073. doi: 10.1099/ijsem.0.003591. Epub 2019 Jul 16.
The taxonomic position of '' LMG 30035, a semduramicin-producing mutant of strain ATCC 53666, which was isolated from a soil sample collected in Yamae Village, Kamamoto, Japan, was clarified in the present study using a polyphasic approach. This Gram-positive, aerobic actinomycete formed a well-developed, extensively branched, non-fragmenting substrate and aerial mycelia which differentiated into single, smooth-appearing spores. Based on analysis of nearly complete 16S rRNA gene sequence, strain LMG 30035 was found to be closely related to the type strains of ATCC 49459 (98.88 %) and JCM 7474 (98.82 %) (pairwise similarity values in parentheses). Digital DNA-DNA hybridisation experiments revealed unambiguously that strain LMG 30035 represents a novel species (OrthoANIu values less than 83.1 %; dDDH values less than 27.2 % with type strains of validly named species). Analysis of the cell wall revealed the presence of -diaminopimelic acid in the peptidoglycan. The whole-cell sugars were glucose, madurose, galactose, ribose and rhamnose. The major polar lipids included phosphatidylinositol and diphosphatidylglycerol. The predominant menaquinones were MK-9(H), MK-9(H), MK-9(H) and MK-9(H). The major fatty acids were C, 10-methyl C, C and C. The DNA G+C content of its genome was 72.5 mol%. In summary, these characteristics distinguish strain LMG 30035 from validly named species of the genus , and therefore, we propose to classify this strain formally as the novel species sp. nov. with LMG 30035 (=CECT 9808,=ATCC 53664) as the type strain.
本研究采用多相分类法,明确了 '' LMG 30035 的分类地位。LMG 30035 是一株从日本鹿儿岛县山江村采集的土壤样品中分离得到的 semduramicin 产生突变株,其模式菌株为 ATCC 53666。该革兰氏阳性、需氧放线菌形成了发育良好、广泛分枝、不分裂的基质和气生菌丝,这些气生菌丝分化成单个、光滑的孢子。基于近全长 16S rRNA 基因序列分析,发现菌株 LMG 30035与 ATCC 49459(98.88%)和 JCM 7474(98.82%)的模式菌株密切相关(括号内为成对相似性值)。数字 DNA-DNA 杂交实验明确表明,菌株 LMG 30035 代表一个新的种(Orthaniu 值小于 83.1%;与有效命名种的模式菌株的 dDDH 值小于 27.2%)。细胞壁分析表明肽聚糖中存在 -二氨基庚二酸。全细胞糖包括葡萄糖、马杜糖、半乳糖、核糖和鼠李糖。主要极性脂包括磷脂酰肌醇和双磷脂酰甘油。主要的menaquinones 为 MK-9(H)、MK-9(H)、MK-9(H)和 MK-9(H)。主要脂肪酸为 C 、10-甲基 C 、C 和 C 。其基因组的 DNA G+C 含量为 72.5mol%。综上所述,这些特征将菌株 LMG 30035 与有效命名的属内种区分开来,因此,我们建议将该菌株正式归类为新种 ,并将 LMG 30035(=CECT 9808,=ATCC 53664)作为模式菌株。