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空肠弯曲菌 NCTC 11168 的驯化。

Domestication of Campylobacter jejuni NCTC 11168.

机构信息

MRC CLIMB Consortium, Bath, UK.

The Milner Centre for Evolution, University of Bath, Claverton Down, Bath, UK.

出版信息

Microb Genom. 2019 Jul;5(7). doi: 10.1099/mgen.0.000279. Epub 2019 Jul 16.

Abstract

Reference and type strains of well-known bacteria have been a cornerstone of microbiology research for decades. The sharing of well-characterized isolates among laboratories has run in parallel with research efforts and enhanced the reproducibility of experiments, leading to a wealth of knowledge about trait variation in different species and the underlying genetics. Campylobacter jejuni strain NCTC 11168, deposited at the National Collection of Type Cultures in 1977, has been adopted widely as a reference strain by researchers worldwide and was the first Campylobacter for which the complete genome was published (in 2000). In this study, we collected 23 C. jejuni NCTC 11168 reference isolates from laboratories across the UK and compared variation in simple laboratory phenotypes with genetic variation in sequenced genomes. Putatively identical isolates, identified previously to have aberrant phenotypes, varied by up to 281 SNPs (in 15 genes) compared to the most recent reference strain. Isolates also display considerable phenotype variation in motility, morphology, growth at 37 °C, invasion of chicken and human cell lines, and susceptibility to ampicillin. This study provides evidence of ongoing evolutionary change among C. jejuni isolates as they are cultured in different laboratories and highlights the need for careful consideration of genetic variation within laboratory reference strains. This article contains data hosted by Microreact.

摘要

著名细菌的参考菌株和模式菌株已经成为微生物学研究数十年来的基石。在实验室之间共享特征明确的分离株与研究工作并行不悖,提高了实验的可重复性,从而积累了大量关于不同物种特征变异和潜在遗传的知识。弯曲菌属空肠亚种 NCTC 11168 于 1977 年被保藏于国立标准菌株收藏中心,被世界各地的研究人员广泛采用作为参考菌株,并且是第一个完整基因组公布的弯曲菌(2000 年)。在这项研究中,我们从英国各地的实验室收集了 23 株空肠弯曲菌 NCTC 11168 参考分离株,并将简单的实验室表型变异与测序基因组中的遗传变异进行了比较。先前鉴定为表型异常的假定相同的分离株与最近的参考菌株相比,差异多达 281 个 SNP(在 15 个基因中)。分离株在运动性、形态、37°C 生长、鸡和人细胞系的侵袭以及对氨苄青霉素的敏感性方面也表现出相当大的表型变异。本研究提供了弯曲菌属分离株在不同实验室培养过程中持续进化变化的证据,并强调了需要仔细考虑实验室参考菌株中的遗传变异。本文包含由 Microreact 托管的数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5295/6700657/2d4b8655cd28/mgen-5-279-g001.jpg

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