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原核生物50S核糖体亚基的特征性视图。

Characteristic views of prokaryotic 50S ribosomal subunits.

作者信息

Harauz G, Stoeffler-Meilicke M, van Heel M

机构信息

Fritz-Haber-Institut der Max-Planck-Gesellschaft, Berlin, West Germany.

出版信息

J Mol Evol. 1987;26(4):347-57. doi: 10.1007/BF02101154.

DOI:10.1007/BF02101154
PMID:3131536
Abstract

Multivariate statistical analysis and classification techniques are powerful tools in sorting noisy electron micrographs of single particles according to their principal features, enabling one to form average images with an enhanced signal-to-noise ratio and a better reproducible resolution. We apply this methodology here to determining the characteristic views of the large (50S) ribosomal subunits from the eubacterium Escherichia coli and the archaebacteria Methanococcus vannielii, Sulfolobus solfataricus, and Halobacterium marismortui. Average images were obtained of the subunit in the common crown and kidney projections, but views of the particle in orientations intermediate between these two extremes were also elucidated for all species. These averages show reproducible detail of up to 2.0 nm resolution, thus enabling the visualization and interspecies comparison of many structural features as a first step toward comparing the actual three-dimensional structures. Our results disprove evolutionary lineages recently postulated on the basis of electron microscopical images of ribosomal subunits.

摘要

多变量统计分析和分类技术是根据单颗粒噪声电子显微照片的主要特征进行分类的强大工具,能使人们形成具有更高信噪比和更好可重复性分辨率的平均图像。我们在此应用这种方法来确定来自真细菌大肠杆菌以及古细菌万氏甲烷球菌、嗜热栖热菌和盐沼盐杆菌的大型(50S)核糖体亚基的特征视图。获得了亚基在常见冠状和肾形投影中的平均图像,并且还阐明了所有物种在这两个极端取向之间的中间取向的颗粒视图。这些平均值显示了高达2.0纳米分辨率的可重复细节,从而能够可视化并对许多结构特征进行种间比较,这是迈向比较实际三维结构的第一步。我们的结果反驳了最近基于核糖体亚基电子显微镜图像所假定的进化谱系。

相似文献

1
Characteristic views of prokaryotic 50S ribosomal subunits.原核生物50S核糖体亚基的特征性视图。
J Mol Evol. 1987;26(4):347-57. doi: 10.1007/BF02101154.
2
Three-dimensional crystals of ribosomes and their subunits from eu- and archaebacteria.
Biochem Int. 1987 Nov;15(5):953-60.
3
The binding site of ribosomal protein L10 in eubacteria and archaebacteria is conserved: reconstitution of chimeric 50S subunits.真细菌和古细菌中核糖体蛋白L10的结合位点保守:嵌合50S亚基的重建。
Biochimie. 1991 Jun;73(6):797-804. doi: 10.1016/0300-9084(91)90059-a.
4
Characteristic views of E. coli and B. stearothermophilus 30S ribosomal subunits in the electron microscope.
EMBO J. 1985 Sep;4(9):2389-95. doi: 10.1002/j.1460-2075.1985.tb03944.x.
5
Classification of images of biomolecular assemblies: a study of ribosomes and ribosomal subunits of Escherichia coli.生物分子聚集体图像分类:大肠杆菌核糖体及核糖体亚基的研究
J Microsc. 1988 May;150(Pt 2):99-115. doi: 10.1111/j.1365-2818.1988.tb04602.x.
6
Structure of Ribosomal Subunits of M. vannielii: Ribosomal Morphology as a Phylogenetic Marker.威氏甲烷球菌核糖体亚基的结构:核糖体形态作为系统发育标记。
Science. 1986 Mar 14;231(4743):1306-8. doi: 10.1126/science.231.4743.1306.
7
Characteristic electron microscopical projections of the small ribosomal subunit from Thermomyces lanuginosus.嗜热栖热放线菌小核糖体亚基的特征性电子显微镜投影
Biochim Biophys Acta. 1992 Apr 6;1130(3):289-96. doi: 10.1016/0167-4781(92)90441-2.
8
Electron microscopical projections of the large ribosomal subunit from Thermomyces lanuginosus.嗜热栖热放线菌大亚基核糖体的电子显微镜投影图。
Biochim Biophys Acta. 1992 Aug 17;1132(1):58-66. doi: 10.1016/0167-4781(92)90052-2.
9
Determination of peptide regions on the surface of the eubacterial and archaebacterial ribosome by limited proteolytic digestion.通过有限蛋白酶消化法测定真细菌和古细菌核糖体表面的肽段区域
Biochemistry. 1991 Dec 24;30(51):11781-7. doi: 10.1021/bi00115a007.
10
Location of eight ribosomal proteins on the surface of the 50S subunit from Escherichia coli.8种核糖体蛋白在大肠杆菌50S亚基表面的定位
Proc Natl Acad Sci U S A. 1983 Nov;80(22):6780-4. doi: 10.1073/pnas.80.22.6780.

引用本文的文献

1
Characterization of the L11, L1, L10 and L12 equivalent ribosomal protein gene cluster of the halophilic archaebacterium Halobacterium cutirubrum.嗜盐古细菌红皮盐杆菌L11、L1、L10和L12等效核糖体蛋白基因簇的特性分析
EMBO J. 1989 Apr;8(4):1225-35. doi: 10.1002/j.1460-2075.1989.tb03496.x.
2
Electron microscopic visualisation of the 5S rRNA-YL3 complex from Saccharomyces cerevisiae.酿酒酵母5S rRNA - YL3复合物的电子显微镜观察。
Mol Cell Biochem. 1992 Nov 4;117(1):11-21. doi: 10.1007/BF00230406.

本文引用的文献

1
Structure of Ribosomal Subunits of M. vannielii: Ribosomal Morphology as a Phylogenetic Marker.威氏甲烷球菌核糖体亚基的结构:核糖体形态作为系统发育标记。
Science. 1986 Mar 14;231(4743):1306-8. doi: 10.1126/science.231.4743.1306.
2
Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction.角度重建:用于三维重建的投影方向的后验分配。
Ultramicroscopy. 1987;21(2):111-23. doi: 10.1016/0304-3991(87)90078-7.
3
Archaebacterial phylogeny: perspectives on the urkingdoms.古细菌系统发育:关于原始界的观点。
Syst Appl Microbiol. 1986;7:161-77. doi: 10.1016/s0723-2020(86)80001-7.
4
Use of multivariate statistics in analysing the images of biological macromolecules.多元统计在生物大分子图像分析中的应用。
Ultramicroscopy. 1981;6(2):187-94. doi: 10.1016/0304-3991(81)90059-0.
5
Comparison of 4 X 6-meric hemocyanins from three different arthropods using computer alignment and correspondence analysis.使用计算机比对和对应分析对来自三种不同节肢动物的4种4×6聚体血蓝蛋白进行比较。
J Mol Biol. 1982 Oct 15;161(1):139-53. doi: 10.1016/0022-2836(82)90283-2.
6
Correspondence analysis of aligned images of biological particles.生物颗粒对齐图像的对应分析。
J Mol Biol. 1982 Oct 15;161(1):134-7. doi: 10.1016/0022-2836(82)90282-0.
7
Localization of 3' ends of 5S and 23S rRNAs in reconstituted subunits of Escherichia coli ribosomes.5S和23S核糖体RNA 3'端在大肠杆菌核糖体重组亚基中的定位
Proc Natl Acad Sci U S A. 1981 Sep;78(9):5538-42. doi: 10.1073/pnas.78.9.5538.
8
Mapping evolution with ribosome structure: intralineage constancy and interlineage variation.利用核糖体结构绘制进化图谱:谱系内的稳定性和谱系间的变异性
Proc Natl Acad Sci U S A. 1982 Oct;79(19):5948-52. doi: 10.1073/pnas.79.19.5948.
9
Strand-like structures and their three-dimensional organization in the large subunit of the Escherichia coli ribosome.大肠杆菌核糖体大亚基中的链状结构及其三维组织
Mol Biol Rep. 1982 Nov 30;8(4):191-7. doi: 10.1007/BF00776579.
10
Specific visualization of ribosomal RNA in the intact ribosome by electron spectroscopic imaging.通过电子光谱成像对完整核糖体中的核糖体RNA进行特异性可视化。
Eur J Cell Biol. 1983 Sep;31(2):334-40.