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基于课程的本科研究经历中的本科生基因敲除表型分析:使用定量表型分析方法探索植物的适应性和活力

Undergraduates Phenotyping Knockouts in a Course-Based Undergraduate Research Experience: Exploring Plant Fitness and Vigor Using Quantitative Phenotyping Methods.

作者信息

Murren Courtney J, Wolyniak Michael J, Rutter Matthew T, Bisner April M, Callahan Hilary S, Strand Allan E, Corwin Lisa A

机构信息

Department of Biology, College of Charleston, Charleston, SC 29424.

Department of Biology, Hampden-Sydney College, Hampden-Sydney, VA 23943.

出版信息

J Microbiol Biol Educ. 2019 Jun 28;20(2). doi: 10.1128/jmbe.v20i2.1650. eCollection 2019.

DOI:10.1128/jmbe.v20i2.1650
PMID:31316686
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6608610/
Abstract

We present a curriculum description, an initial student outcome investigation, and sample scientific results for a representative Course-Based Undergraduate Research Experience (CURE) that is part of the "Undergraduates Phenotyping Knockouts" (unPAK) network. CUREs in the unPAK network characterize quantitative phenotypes of the model plant from across environments to uncover connections between genotype and phenotype. Students in unPAK CUREs grow plants in a replicated block design and make quantitative measurements throughout the semester. This CURE enables students to answer plant science questions that draw from fields such as environmental science, genetics, ecology, and evolution. Findings indicate that this experience provides students with opportunities to make relevant scientific discoveries. Eighty percent of student datasets produced from the CURE met criteria for inclusion in the project database, indicative of student learning in data collection and analysis of quantitative plant traits. Student datasets uncovered novel effects of mutation on plant form. In addition, students' science self-efficacy increased as a result of course participation, and faculty feedback on course implementation was positive. We present unPAK as a new network that supports CUREs and research experiences focused on collecting biological data made publicly available to the scientific community. The unPAK CUREs can be tailored to address instructor interests or pedagogical needs while involving students in research investigating quantitative plant phenotypes.

摘要

我们介绍了一门具有代表性的基于课程的本科研究经验(CURE)的课程描述、对学生初步成果的调查以及样本科学结果,该CURE是“本科生基因敲除表型分析”(unPAK)网络的一部分。unPAK网络中的CURE对模式植物在不同环境下的定量表型进行表征,以揭示基因型和表型之间的联系。参与unPAK CURE的学生采用重复区组设计种植植物,并在整个学期进行定量测量。这种CURE使学生能够回答来自环境科学、遗传学、生态学和进化等领域的植物科学问题。研究结果表明,这种经历为学生提供了进行相关科学发现的机会。该CURE产生的学生数据集有80%符合纳入项目数据库的标准,这表明学生在定量植物性状的数据收集和分析方面有所收获。学生数据集揭示了突变对植物形态的新影响。此外,学生的科学自我效能感因参与课程而有所提高,教师对课程实施的反馈也很积极。我们将unPAK作为一个新的网络进行介绍,该网络支持CURE以及专注于收集向科学界公开的生物数据的研究经验。unPAK CURE可以根据教师的兴趣或教学需求进行调整,同时让学生参与研究定量植物表型的调查。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e9a/6608610/03b024169e26/jmbe-20-28f3b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e9a/6608610/f0c534fdb4da/jmbe-20-28f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e9a/6608610/86d3488f084d/jmbe-20-28f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e9a/6608610/dc3bc66ba865/jmbe-20-28f3a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e9a/6608610/03b024169e26/jmbe-20-28f3b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e9a/6608610/f0c534fdb4da/jmbe-20-28f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e9a/6608610/86d3488f084d/jmbe-20-28f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e9a/6608610/dc3bc66ba865/jmbe-20-28f3a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e9a/6608610/03b024169e26/jmbe-20-28f3b.jpg

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