Division of Infectious Diseases and Vaccinology, School of Public Health, University of California, Berkeley, CA 94720.
Microbiol Spectr. 2019 Jul;7(4). doi: 10.1128/microbiolspec.AME-0007-2019.
One important scope of work of epidemiology is the investigation of infectious diseases that cluster in time and place. Clusters of infectious disease may represent outbreaks or epidemics in which the cases share in common a point source exposure or an infectious agent in a chain of transmission pathways. Investigations of outbreaks of an illness can facilitate identification of a source, risk, or cause of the illness. However, most infectious disease episodes occur not as part of any apparent outbreaks but as sporadic infections. Multiple sporadic infections that occur steadily in time and place are referred to as endemic disease. How does one investigate sources and risk factors for sporadic or endemic infections? As part of the Curated Collection: Advances in Molecular Epidemiology of Infectious Diseases, this review discusses limitations of traditional approaches and advantages of molecular epidemiology approaches to investigate sporadic and endemic infections. Using specific examples, the discussions show that most sporadic infections are actually part of unrecognized outbreaks and that what appears to be endemic disease occurrence is actually comprised of multiple small outbreaks. These molecular epidemiologic investigations have unmasked modes of transmission of infectious agents not known to cause outbreaks. They have also raised questions about the traditional ways to measure incidence and assess sources of drug-resistant infections in community settings. The discoveries made by the application of molecular microbiology methods in epidemiologic investigations have led to creation of new public health intervention strategies that have not been previously considered. *This article is part of a curated collection.
流行病学的一个重要工作范围是调查在时间和地点上集中发生的传染病。传染病聚集可能代表暴发或流行,其中病例共同具有一个共同的暴露源或传染途径中的感染因子。对疾病暴发的调查有助于确定疾病的来源、风险或原因。然而,大多数传染病发作并非作为任何明显暴发的一部分,而是作为散发性感染。在时间和地点上持续发生的多个散发性感染被称为地方性疾病。如何调查散发性或地方性感染的来源和危险因素?作为分子流行病学在传染病中的进展精选集的一部分,这篇综述讨论了传统方法的局限性和分子流行病学方法调查散发性和地方性感染的优势。通过具体示例,讨论表明,大多数散发性感染实际上是未被识别暴发的一部分,而看似地方性疾病的发生实际上是由多个小暴发组成的。这些分子流行病学调查揭示了未知引起暴发的感染因子的传播方式。它们还提出了关于在社区环境中衡量发病率和评估耐药性感染来源的传统方法的问题。分子微生物学方法在流行病学调查中的应用所带来的发现导致了以前未曾考虑过的新的公共卫生干预策略的创建。*本文是精选集的一部分。