Department of Biology, Indiana University-Purdue University Indianapolis, 723 W Michigan St, SL 306, Indianapolis, IN, 46202, USA.
Department of Geography, Indiana University-Purdue University Indianapolis, 425 University Blvd, Cavanaugh Hall 441, Indianapolis, IN, 46202, USA.
Sci Rep. 2019 Jul 22;9(1):10594. doi: 10.1038/s41598-019-46758-9.
Rapid vertebrate diversity evaluation is invaluable for monitoring changing ecosystems worldwide. Wild blow flies naturally recover DNA and chemical signatures from animal carcasses and feces. We demonstrate the power of blow flies as biodiversity monitors through sampling of flies in three environments with varying human influences: Indianapolis, IN and two national parks (the Great Smoky Mountains and Yellowstone). Dissected fly guts underwent vertebrate DNA sequencing (12S and 16S rRNA genes) and fecal metabolite screening. Integrated Nested Laplace Approximation (INLA) was used to determine the most important abiotic factor influencing fly-derived vertebrate richness. In 720 min total sampling time, 28 vertebrate species were identified, with 42% of flies containing vertebrate resources: 23% DNA, 5% feces, and 14% contained both. The species of blow fly used was not important for vertebrate DNA recovery, however the use of female flies versus male flies directly influenced DNA detection. Temperature was statistically relevant across environments in maximizing vertebrate detection (mean = 0.098, sd = 0.048). This method will empower ecologists to test vertebrate community ecology theories previously out of reach due practical challenges associated with traditional sampling.
快速评估脊椎动物多样性对于监测全球变化的生态系统至关重要。野生的麻蝇能够自然地从动物尸体和粪便中回收 DNA 和化学特征。我们通过在三个受人类影响程度不同的环境(印第安纳波利斯、两个国家公园(大雾山和黄石公园))中采集麻蝇,证明了麻蝇作为生物多样性监测器的作用。对麻蝇的肠道进行解剖,进行脊椎动物 DNA 测序(12S 和 16S rRNA 基因)和粪便代谢物筛选。采用整合嵌套 Laplace 逼近法(INLA)确定影响基于蝇类的脊椎动物丰富度的最重要非生物因素。在 720 分钟的总采样时间内,鉴定出 28 个脊椎动物物种,其中 42%的麻蝇含有脊椎动物资源:23%的 DNA、5%的粪便,14%的同时含有两者。使用的麻蝇种类对于脊椎动物 DNA 的回收并不重要,但是使用雌蝇而不是雄蝇直接影响 DNA 的检测。温度在最大限度地提高脊椎动物检测方面在不同环境中具有统计学意义(平均值=0.098,标准差=0.048)。这种方法将使生态学家能够测试以前由于传统采样相关的实际挑战而无法企及的脊椎动物群落生态学理论。