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树种塑造温带落叶林土壤细菌群落结构与功能

Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests.

作者信息

Dukunde Amélie, Schneider Dominik, Schmidt Marcus, Veldkamp Edzo, Daniel Rolf

机构信息

Göttingen Genomics Laboratory, Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany.

Soil Science of Tropical and Subtropical Ecosystems, Faculty of Forest Sciences and Forest Ecology, Büsgen Institute, Georg-August University of Göttingen, Göttingen, Germany.

出版信息

Front Microbiol. 2019 Jul 9;10:1519. doi: 10.3389/fmicb.2019.01519. eCollection 2019.

Abstract

Amplicon-based analysis of 16S rRNA genes and transcripts was used to assess the effect of tree species composition on soil bacterial community structure and function in a temperate deciduous forest. Samples were collected from mono and mixed stands of (beech), (hornbeam), sp. (lime), and sp. (oak) in spring, summer, and autumn. Soil bacterial community exhibited similar taxonomic composition at total (DNA-based) and potentially active community (RNA-based) level, with fewer taxa present at active community level. Members of dominated at both total and active bacterial community level, followed by members of , , and . Bacterial communities at total and active community level showed a significant positive correlation with tree species identity (mono stands) and to a lesser extent with tree species richness (mixed stands). Approximately 58 and 64% of indicator operational taxonomic units (OTUs) showed significant association with only one mono stand at total and active community level, respectively, indicating a strong impact of tree species on soil bacterial community composition. Soil C/N ratio, pH, and P content similarly exhibited a significant positive correlation with soil bacterial communities, which was attributed to direct and indirect effects of forest stands. Seasonality was the strongest driver of predicted metabolic functions related to C fixation and degradation, and N metabolism. Carbon and nitrogen metabolic processes were significantly abundant in spring, while C degradation gene abundances increased from summer to autumn, corresponding to increased litterfall and decomposition. The results revealed that in a spatially homogenous forest soil, tree species diversity and richness are dominant drivers of structure and composition in soil bacterial communities.

摘要

基于扩增子的16S rRNA基因和转录本分析被用于评估温带落叶林中树种组成对土壤细菌群落结构和功能的影响。在春季、夏季和秋季,从山毛榉、鹅耳枥、椴树和橡树的纯林和混交林中采集样本。土壤细菌群落在总群落(基于DNA)和潜在活跃群落(基于RNA)水平上表现出相似的分类组成,活跃群落水平上的分类单元较少。变形菌门成员在总细菌群落和活跃细菌群落水平上均占主导地位,其次是放线菌门、酸杆菌门和芽单胞菌门成员。总群落和活跃群落水平上的细菌群落与树种身份(纯林)呈显著正相关,与树种丰富度(混交林)的相关性较小。分别约有58%和64%的指示性操作分类单元(OTU)在总群落和活跃群落水平上仅与一种纯林有显著关联,表明树种对土壤细菌群落组成有强烈影响。土壤碳氮比、pH值和磷含量同样与土壤细菌群落呈显著正相关,这归因于林分的直接和间接影响。季节性是与碳固定和降解以及氮代谢相关的预测代谢功能的最强驱动因素。碳和氮代谢过程在春季显著丰富,而碳降解基因丰度从夏季到秋季增加,这与凋落物和分解增加相对应。结果表明,在空间均匀的森林土壤中,树种多样性和丰富度是土壤细菌群落结构和组成的主要驱动因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b545/6629791/6a8c517853d8/fmicb-10-01519-g001.jpg

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