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CAM 植物基因的鉴定与表达。

Identification and Expression of Genes in the CAM Plant .

机构信息

School of Agriculture, Yunnan University, Kunming 650504, China.

Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.

出版信息

Genes (Basel). 2019 Jul 23;10(7):555. doi: 10.3390/genes10070555.

Abstract

species are important crassulacean acid metabolism (CAM) plants and widely cultivated in tropical areas for producing tequila spirit and fiber. The hybrid H11648 of (( × ) × A. ) is the main cultivar for fiber production in Brazil, China, and African countries. () genes have broad effect on auxin signaling-regulated plant growth and development, while only few genes have been reported in species. In this study, we identified 43, 60, 24, and 21 genes with full-length coding regions in , , . H11648, and , respectively. Although phylogenetic analysis revealed that rice contained a species-specific expansion pattern of gene, no similar phenomena were observed in species. The in silico expression indicated that genes had a distinct expression pattern in . H11648 compared with other species; and four genes were differentially expressed during CAM diel cycle in . Additionally, an expression analysis was conducted to estimate gene expression during different leaf developmental stages, abiotic and biotic stresses in . H11648. Together, we first characterized the genes of based on previously published transcriptome datasets and emphasized the potential functions of genes in leaf development and stress responses. The identification of which further expands our understanding on auxin signaling-regulated plant growth and development in species.

摘要

物种是重要的景天酸代谢(CAM)植物,广泛种植在热带地区,用于生产龙舌兰酒和纤维。杂种 H11648((×)×A.)是巴西、中国和非洲国家生产纤维的主要品种。()基因对生长素信号调控的植物生长发育有广泛的影响,而在 物种中只报道了少数几个 基因。在这项研究中,我们在 、 、 、H11648 和 中分别鉴定出了 43、60、24 和 21 个具有全长编码区的 基因。尽管系统发育分析表明,水稻含有一个特定于物种的 基因扩展模式,但在 物种中没有观察到类似的现象。计算机表达分析表明,在 H11648 中, 基因具有明显的表达模式,与其他 物种不同;并且在 中,有四个 基因在 CAM 昼夜周期中表达差异。此外,还进行了表达分析,以估计在 H11648 中不同叶片发育阶段、非生物和生物胁迫下的 基因表达。综上所述,我们首次基于已发表的转录组数据集对 基因进行了特征描述,并强调了 基因在 叶片发育和应激反应中的潜在功能。该鉴定进一步扩展了我们对生长素信号调控植物生长发育的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8de4/6679190/a949807ff2d9/genes-10-00555-g001.jpg

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