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葡萄小型生长素上调 RNA ( ) 041 是调控葡萄浆果大小的候选基因。

Grape Small Auxin Upregulated RNA () 041 Is a Candidate Regulator of Berry Size in Grape.

机构信息

Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, Zhengzhou 450009, China.

Biotechnology Research Institute, Tianjin Academy of Agricultural Sciences, Tianjin 300192, China.

出版信息

Int J Mol Sci. 2021 Oct 30;22(21):11818. doi: 10.3390/ijms222111818.

Abstract

Grape () is an important horticultural crop that can be used to make juice and wine. However, the small size of the berry limits its yield. Cultivating larger berry varieties can be an effective way to solve this problem. As the largest family of auxin early response genes, (small auxin upregulated RNA) plays an important role in the growth and development of plants. Berry size is one of the important factors that determine grape quality. However, the gene family's function in berry size of grape has not been studied systematically. We identified 60 members in the grape genome and divided them into 12 subfamilies based on phylogenetic analysis. Subsequently, we conducted a comprehensive and systematic analysis on the gene family by analyzing distribution of key amino acid residues in the domain, structural features, conserved motifs, and protein interaction network, and combined with the heterologous expression in and tomato. Finally, the member related to grape berry size in gene family were screened. This genome-wide study provides a systematic analysis of grape gene family, further understanding the potential functions of candidate genes, and provides a new idea for grape breeding.

摘要

葡萄是一种重要的园艺作物,可用于制作果汁和葡萄酒。然而,浆果的小尺寸限制了其产量。培育更大的浆果品种可以有效解决这个问题。作为生长素早期反应基因家族中最大的一个,小生长素上调 RNA 在植物的生长和发育中起着重要作用。浆果大小是决定葡萄品质的重要因素之一。然而,葡萄中 基因家族在浆果大小方面的功能尚未得到系统研究。我们在葡萄基因组中鉴定出 60 个成员,并根据系统发育分析将它们分为 12 个亚家族。随后,我们通过分析结构域中关键氨基酸残基的分布、结构特征、保守基序以及蛋白质相互作用网络,对 基因家族进行了全面而系统的分析,并结合在 和番茄中的异源表达。最后,筛选出与葡萄浆果大小相关的 基因家族成员。这项全基因组研究为葡萄 基因家族提供了系统的分析,进一步了解候选基因的潜在功能,并为葡萄的育种提供了新的思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db7f/8584205/ad8354be0e58/ijms-22-11818-g001.jpg

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