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中国乌鲁木齐一号冰川土壤发育时间序列上抗生素抗性基因的分布与演替特征

Distribution and Succession Feature of Antibiotic Resistance Genes Along a Soil Development Chronosequence in Urumqi No.1 Glacier of China.

作者信息

Shen Ju-Pei, Li Zong-Ming, Hu Hang-Wei, Zeng Jun, Zhang Li-Mei, Du Shuai, He Ji-Zheng

机构信息

State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China.

College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China.

出版信息

Front Microbiol. 2019 Jul 9;10:1569. doi: 10.3389/fmicb.2019.01569. eCollection 2019.

Abstract

Primary succession of plant and microbial communities in the glacier retreating foreland has been extensively studied, but shifts of antibiotic resistance genes (ARGs) with the glacier retreating due to global warming remain elusive. Unraveling the diversity and succession features of ARGs in pristine soil during glacier retreating could contribute to a mechanistic understanding of the evolution and development of soil resistome. In this study, we quantified the abundance and diversity of ARGs along a 50-year soil development chronosequence by using a high-throughput quantitative PCR (HT-qPCR) technique. A total of 24 ARGs and two mobile genetic elements (MGEs) were detected from all the glacier samples, and the numbers of detected ARGs showed a unimodal pattern with an increasing trend at the early stage (0∼8 years) but no significant change at later stages (17∼50 years). The J and F genes encoding multidrug resistance were the only two ARGs that were detected across all the succession ages, and the F gene showed an increasing trend along the succession time. Structural equation models indicated the predominant role of the gene encoding the Class 1 integron-integrase in shaping the variation of ARG profiles. These findings suggested the presence of ARGs in pristine soils devoid of anthropogenic impacts, and horizontal gene transfer mediated by MGEs may contribute to the succession patterns of ARGs during the initial soil formation stage along the chronosequence.

摘要

植物和微生物群落的原生演替在冰川退缩前沿地区已得到广泛研究,但由于全球变暖导致冰川退缩过程中抗生素抗性基因(ARGs)的变化仍不明确。揭示冰川退缩过程中原始土壤中ARGs的多样性和演替特征,有助于从机制上理解土壤抗性组的演化和发展。在本研究中,我们使用高通量定量PCR(HT-qPCR)技术,沿着一个50年的土壤发育时间序列,对ARGs的丰度和多样性进行了量化。从所有冰川样本中共检测到24个ARGs和两个可移动遗传元件(MGEs),检测到的ARGs数量呈现单峰模式,在早期阶段(0至8年)呈增加趋势,但在后期阶段(17至50年)无显著变化。编码多重耐药性的J和F基因是在所有演替阶段都检测到的仅有的两个ARGs,并且F基因沿着演替时间呈增加趋势。结构方程模型表明,编码1类整合子整合酶的基因在塑造ARGs谱的变化中起主要作用。这些发现表明,在没有人为影响的原始土壤中存在ARGs,并且由MGEs介导的水平基因转移可能有助于沿时间序列在初始土壤形成阶段ARGs的演替模式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a77a/6629927/0cafef12e237/fmicb-10-01569-g001.jpg

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