Tian Liang, Conway Peter M, Cervenka Nicholas D, Cui Jingxuan, Maloney Marybeth, Olson Daniel G, Lynd Lee R
1Thayer School of Engineering, Dartmouth College, Hanover, NH 03755 USA.
2Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37830 USA.
Biotechnol Biofuels. 2019 Jul 23;12:186. doi: 10.1186/s13068-019-1524-6. eCollection 2019.
Biofuel production from plant cell walls offers the potential for sustainable and economically attractive alternatives to petroleum-based products. In particular, is a promising host for consolidated bioprocessing (CBP) because of its strong native ability to ferment cellulose.
We tested 12 different enzyme combinations to identify an -butanol pathway with high titer and thermostability in . The best producing strain contained the thiolase-hydroxybutyryl-CoA dehydrogenase-crotonase (Thl-Hbd-Crt) module from , the trans-enoyl-CoA reductase (Ter) enzyme from and the butyraldehyde dehydrogenase and alcohol dehydrogenase (Bad-Bdh) module from sp. X514 and was able to produce 88 mg/L -butanol. The key enzymes from this combination were further optimized by protein engineering. The Thl enzyme was engineered by introducing homologous mutations previously identified in . The Hbd and Ter enzymes were engineered for changes in cofactor specificity using the CSR-SALAD algorithm to guide the selection of mutations. The cofactor engineering of Hbd had the unexpected side effect of also increasing activity by 50-fold.
Here we report engineering to produce butanol. Our initial pathway designs resulted in low levels (88 mg/L) of butanol production. By engineering the protein sequence of key enzymes in the pathway, we increased the butanol titer by 2.2-fold. We further increased -butanol production by adding ethanol to the growth media. By combining all these improvements, the engineered strain was able to produce 357 mg/L of -butanol from cellulose within 120 h.
利用植物细胞壁生产生物燃料为石油基产品提供了可持续且具有经济吸引力的替代方案。特别是,由于其强大的天然纤维素发酵能力,是整合生物加工(CBP)的一个有前途的宿主。
我们测试了12种不同的酶组合,以在中鉴定出具有高滴度和热稳定性的丁醇途径。最佳生产菌株包含来自的硫解酶-羟基丁酰辅酶A脱氢酶-巴豆酸酶(Thl-Hbd-Crt)模块、来自的反式烯酰辅酶A还原酶(Ter)酶以及来自sp. X514的丁醛脱氢酶和乙醇脱氢酶(Bad-Bdh)模块,能够产生88mg/L的丁醇。通过蛋白质工程对该组合中的关键酶进行了进一步优化。通过引入先前在中鉴定出的同源突变对Thl酶进行了工程改造。使用CSR-SALAD算法指导突变选择,对Hbd和Ter酶进行了辅因子特异性改变的工程改造。Hbd的辅因子工程产生了意想不到的副作用,即活性也提高了50倍。
在此我们报告了对进行工程改造以生产丁醇。我们最初的途径设计导致丁醇产量较低(88mg/L)。通过对途径中关键酶的蛋白质序列进行工程改造,我们将丁醇滴度提高了2.2倍。通过向生长培养基中添加乙醇,我们进一步提高了丁醇产量。通过结合所有这些改进,工程菌株能够在120小时内从纤维素中产生357mg/L的丁醇。