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用于检测O157:H7的实时荧光定量PCR方法的对比及引入内参扩增对照

Contrast of Real-Time Fluorescent PCR Methods for Detection of O157:H7 and of Introducing an Internal Amplification Control.

作者信息

Zhao Xihong, Xia Jing, Liu Yao

机构信息

Research Center for Environmental Ecology and Engineering, Key Laboratory for Green Chemical Process of Ministry of Education, Key Laboratory for Hubei Novel Reactor and Green Chemical Technology, School of Environmental Ecology and Biological Engineering, Wuhan Institute of Technology, Wuhan 430205, China.

School of Pharmacy and Food Science, Zhuhai College of Jilin University, Zhuhai 519041, China.

出版信息

Microorganisms. 2019 Jul 31;7(8):230. doi: 10.3390/microorganisms7080230.

Abstract

Various constituents in food specimens can inhibit the PCR assay and lead to false-negative results. An internal amplification control was employed to monitor the presence of false-negative results in PCR amplification. In this study, the objectives were to compare the real-time PCR-based method by introducing a competitive internal amplification control (IAC) for the detection of O157:H7 with respect to the specificity of the primers and probes, analytical sensitivity, and detection limits of contamination-simulated drinking water. Additionally, we optimized the real-time fluorescent PCR detection system for O157:H7. The specificity of primers and probes designed for the gene was evaluated using four kinds of bacterial strains, including O157:H7, , and strains. The real time PCR assay unambiguously distinguished the O157:H7 strains after 16 cycles. Simultaneously, the lowest detection limit for O157:H7 in water samples introducing the IAC was 10 CFU/mL. The analytical sensitivity in water samples had no influence on the detection limit compared with that of pure cultures. The inclusion of an internal amplification control in the real-time PCR assay presented a positive IAC amplification signal in artificially simulated water samples. These results indicated that real-time fluorescent PCR combined with the IAC possessed good characteristics of stability, sensitivity, and specificity. Consequently, the adjusted methods have the potential to support the fast and sensitive detection of O157:H7, enabling accurate quantification and preventing false negative results in O157:H7 contaminated samples.

摘要

食品样本中的各种成分会抑制聚合酶链反应(PCR)检测,导致假阴性结果。采用内部扩增对照来监测PCR扩增中假阴性结果的出现情况。在本研究中,目标是通过引入竞争性内部扩增对照(IAC),比较基于实时PCR的方法在检测O157:H7时引物和探针的特异性、分析灵敏度以及模拟污染饮用水的检测限。此外,我们优化了针对O157:H7的实时荧光PCR检测系统。使用四种细菌菌株评估为该基因设计的引物和探针的特异性,这四种菌株包括O157:H7、、和菌株。实时PCR检测在16个循环后明确区分了O157:H7菌株。同时,引入IAC的水样中O157:H7的最低检测限为10 CFU/mL。与纯培养物相比,水样中的分析灵敏度对检测限没有影响。在实时PCR检测中加入内部扩增对照后,人工模拟水样中出现了IAC的阳性扩增信号。这些结果表明,实时荧光PCR结合IAC具有良好的稳定性、灵敏度和特异性。因此,调整后的方法有潜力支持对O157:H7进行快速灵敏的检测,实现准确定量并防止O157:H7污染样本出现假阴性结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc0a/6723022/b3723a3fa459/microorganisms-07-00230-g001.jpg

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