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俄罗斯北欧地区博尔谢赫鲁斯洛梅尼半咸水亚北极湖化学跃层微生物群落的宏基因组数据。

Metagenomic data of the microbial community of the chemocline layer of the meromictic subarctic Lake Bolshie Hruslomeny, North European Russia.

作者信息

Kadnikov Vitaly V, Savvichev Alexander S, Mardanov Andrey V, Beletsky Alexey V, Ravin Nikolai V, Pimenov Nikolai V

机构信息

Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.

Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.

出版信息

Data Brief. 2019 Mar 2;23:103800. doi: 10.1016/j.dib.2019.103800. eCollection 2019 Apr.

DOI:10.1016/j.dib.2019.103800
PMID:31372445
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6660547/
Abstract

The Lake Bolshie Hruslomeny is located on the shores of the Kandalaksha Bay of the White Sea, North European Russia. This lake, formed from the sea bay and still retaining the subsurface connection with the sea, is meromictic, with a fresh oxygenated upper layer and an anoxic brackish hypolimnion with high concentrations of methane and hydrogen sulphide. To characterize the microbial communities involved in the carbon and sulfur cycles in the lake, we sequenced the metagenome of a water sample collected at the chemocline level. At the phylum level, , , and were the most numerous groups. The obtained data will help investigate the diversity and ecological role of the microbial community in the Lake Bolshie Hruslomeny and provide insight into the biogeochemical processes in subarctic lakes. The raw sequencing data is available from the NCBI Sequence Read Archive (SRA) database under the BioProject PRJNA503531.

摘要

大赫鲁斯洛梅尼湖位于俄罗斯北欧地区白海坎达拉克沙湾的岸边。这个由海湾形成且仍与大海保持地下连接的湖泊是半混合湖,有一个富含氧气的淡水上层和一个缺氧的微咸下层,其中甲烷和硫化氢浓度很高。为了表征参与该湖碳和硫循环的微生物群落,我们对在化学跃层水平采集的水样进行了宏基因组测序。在门水平上, 、 、 和 是数量最多的类群。所获得的数据将有助于研究大赫鲁斯洛梅尼湖微生物群落的多样性和生态作用,并深入了解亚北极湖泊中的生物地球化学过程。原始测序数据可从NCBI序列读取存档(SRA)数据库中获取,生物项目编号为PRJNA503531。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e74/6660547/da50f575bde4/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e74/6660547/da50f575bde4/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e74/6660547/da50f575bde4/gr1.jpg

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Front Microbiol. 2020 Aug 11;11:1945. doi: 10.3389/fmicb.2020.01945. eCollection 2020.

本文引用的文献

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Fast and sensitive taxonomic classification for metagenomics with Kaiju.使用Kaiju对宏基因组学进行快速且灵敏的分类学分类。
Nat Commun. 2016 Apr 13;7:11257. doi: 10.1038/ncomms11257.
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Anaerobic microbial communities in Lake Pavin, a unique meromictic lake in France.法国独特的半混合湖帕万湖中的厌氧微生物群落。
Appl Environ Microbiol. 2005 Nov;71(11):7389-400. doi: 10.1128/AEM.71.11.7389-7400.2005.