• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对α-羟基酸氧化酶的生化和结构探索揭示了一个四电子氧化脱羧反应。

Biochemical and structural explorations of α-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.

机构信息

Genomics Research Center, Academia Sinica, Taipei 115, Taiwan.

Department of Food Science, National Taiwan Ocean University, Keelung 202, Taiwan.

出版信息

Acta Crystallogr D Struct Biol. 2019 Aug 1;75(Pt 8):733-742. doi: 10.1107/S2059798319009574. Epub 2019 Jul 30.

DOI:10.1107/S2059798319009574
PMID:31373572
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6677016/
Abstract

p-Hydroxymandelate oxidase (Hmo) is a flavin mononucleotide (FMN)-dependent enzyme that oxidizes mandelate to benzoylformate. How the FMN-dependent oxidation is executed by Hmo remains unclear at the molecular level. A continuum of snapshots from crystal structures of Hmo and its mutants in complex with physiological/nonphysiological substrates, products and inhibitors provides a rationale for its substrate enantioselectivity/promiscuity, its active-site geometry/reactivity and its direct hydride-transfer mechanism. A single mutant, Y128F, that extends the two-electron oxidation reaction to a four-electron oxidative decarboxylation reaction was unexpectedly observed. Biochemical and structural approaches, including biochemistry, kinetics, stable isotope labeling and X-ray crystallography, were exploited to reach these conclusions and provide additional insights.

摘要

对羟基扁桃酸氧化酶(Hmo)是一种黄素单核苷酸(FMN)依赖性酶,可将扁桃酸氧化为苯甲酰甲酸。Hmo 如何进行 FMN 依赖性氧化在分子水平上仍不清楚。Hmo 及其与生理/非生理底物、产物和抑制剂复合物的晶体结构的连续快照为其底物对映选择性/混杂性、活性位点几何形状/反应性及其直接氢化物转移机制提供了依据。出乎意料地观察到一个单一的突变体 Y128F,它将双电子氧化反应扩展到四电子氧化脱羧反应。利用生物化学、动力学、稳定同位素标记和 X 射线晶体学等生化和结构方法得出了这些结论,并提供了更多的见解。

相似文献

1
Biochemical and structural explorations of α-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction.对α-羟基酸氧化酶的生化和结构探索揭示了一个四电子氧化脱羧反应。
Acta Crystallogr D Struct Biol. 2019 Aug 1;75(Pt 8):733-742. doi: 10.1107/S2059798319009574. Epub 2019 Jul 30.
2
The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.α-羟基酸氧化酶中的黄素单核苷酸辅因子通过控制底物氧化水平来发挥其亲电/亲核双重性。
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):918-929. doi: 10.1107/S2059798319011938. Epub 2019 Sep 24.
3
Esters of mandelic acid as substrates for (S)-mandelate dehydrogenase from Pseudomonas putida: implications for the reaction mechanism.扁桃酸酯作为恶臭假单胞菌(S)-扁桃酸脱氢酶的底物:对反应机制的启示
Biochemistry. 2004 Feb 24;43(7):1883-90. doi: 10.1021/bi036021y.
4
Arginine 165/arginine 277 pair in (S)-mandelate dehydrogenase from Pseudomonas putida: role in catalysis and substrate binding.恶臭假单胞菌(S)-扁桃酸脱氢酶中精氨酸165/精氨酸277对:在催化和底物结合中的作用
Biochemistry. 2002 Oct 15;41(41):12313-9. doi: 10.1021/bi026258e.
5
Role of glycine 81 in (S)-mandelate dehydrogenase from Pseudomonas putida in substrate specificity and oxidase activity.甘氨酸81在恶臭假单胞菌(S)-扁桃酸脱氢酶的底物特异性和氧化酶活性中的作用。
Biochemistry. 2004 Aug 24;43(33):10692-700. doi: 10.1021/bi049005p.
6
(S)-Mandelate dehydrogenase from Pseudomonas putida: mutations of the catalytic base histidine-274 and chemical rescue of activity.恶臭假单胞菌的(S)-扁桃酸脱氢酶:催化碱基组氨酸-274的突变及活性的化学挽救
Biochemistry. 1999 Aug 3;38(31):9948-55. doi: 10.1021/bi9907532.
7
(S)-Mandelate dehydrogenase from Pseudomonas putida: mechanistic studies with alternate substrates and pH and kinetic isotope effects.恶臭假单胞菌的(S)-扁桃酸脱氢酶:使用替代底物、pH值及动力学同位素效应的机理研究
Biochemistry. 1999 May 4;38(18):5836-48. doi: 10.1021/bi990024m.
8
Hydroxamates as substrates and inhibitors for FMN-dependent 2-hydroxy acid dehydrogenases.异羟肟酸作为黄素单核苷酸依赖的2-羟基酸脱氢酶的底物和抑制剂。
Bioorg Chem. 2002 Jun;30(3):145-62. doi: 10.1006/bioo.2002.1237.
9
A transient intermediate in the reaction catalyzed by (S)-mandelate dehydrogenase from Pseudomonas putida.恶臭假单胞菌(S)-扁桃酸脱氢酶催化反应中的一种瞬态中间体。
Biochemistry. 2003 Nov 11;42(44):12893-901. doi: 10.1021/bi035349o.
10
Potentiometric and further kinetic characterization of the flavin-binding domain of Saccharomyces cerevisiae flavocytochrome b2. Inhibition by anions binding in the active site.酿酒酵母黄素细胞色素b2黄素结合结构域的电位测定及进一步的动力学表征。活性位点中阴离子结合的抑制作用。
Biochemistry. 2007 Apr 17;46(15):4661-70. doi: 10.1021/bi602634y. Epub 2007 Mar 21.

引用本文的文献

1
Flavin Mononucleotide-Dependent l-Lactate Dehydrogenases: Expanding the Toolbox of Enzymes for l-Lactate Biosensors.黄素单核苷酸依赖性L-乳酸脱氢酶:拓展用于L-乳酸生物传感器的酶工具箱
ACS Omega. 2022 Oct 31;7(45):41480-41492. doi: 10.1021/acsomega.2c05257. eCollection 2022 Nov 15.
2
Structural and chemical trapping of flavin-oxide intermediates reveals substrate-directed reaction multiplicity.结构和化学捕获黄素氧化物中间体揭示了底物导向的反应多样性。
Protein Sci. 2020 Jul;29(7):1655-1666. doi: 10.1002/pro.3879. Epub 2020 May 26.
3
The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level.

本文引用的文献

1
Same Substrate, Many Reactions: Oxygen Activation in Flavoenzymes.同一底物,多种反应:黄素酶中的氧活化。
Chem Rev. 2018 Feb 28;118(4):1742-1769. doi: 10.1021/acs.chemrev.7b00650. Epub 2018 Jan 11.
2
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
3
QM/MM study of l-lactate oxidation by flavocytochrome b2.黄素细胞色素b2催化L-乳酸氧化的量子力学/分子力学研究
α-羟基酸氧化酶中的黄素单核苷酸辅因子通过控制底物氧化水平来发挥其亲电/亲核双重性。
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):918-929. doi: 10.1107/S2059798319011938. Epub 2019 Sep 24.
Phys Chem Chem Phys. 2016 Jun 21;18(23):15609-18. doi: 10.1039/c6cp00395h. Epub 2016 May 25.
4
Trifluorosubstrates as mechanistic probes for an FMN-dependent l-2-hydroxy acid-oxidizing enzyme.三氟底物作为一种用于依赖黄素单核苷酸的L-2-羟基酸氧化酶的机制探针。
Biochim Biophys Acta. 2016 Sep;1864(9):1215-1221. doi: 10.1016/j.bbapap.2016.05.001. Epub 2016 May 4.
5
Mechanism of Decarboxylation of Pyruvic Acid in the Presence of Hydrogen Peroxide.过氧化氢存在下丙酮酸的脱羧机制
J Pharm Sci. 2016 Feb;105(2):705-713. doi: 10.1002/jps.24653. Epub 2016 Jan 29.
6
Structural aspects of phenylglycines, their biosynthesis and occurrence in peptide natural products.苯丙氨酸结构、生物合成及其在肽类天然产物中的存在。
Nat Prod Rep. 2015 Aug;32(8):1207-35. doi: 10.1039/c5np00025d.
7
MD and QM/MM studies on long-chain L-α-hydroxy acid oxidase: substrate binding features and oxidation mechanism.长链L-α-羟基酸氧化酶的分子动力学(MD)和量子力学/分子力学(QM/MM)研究:底物结合特征及氧化机制
J Phys Chem B. 2014 May 22;118(20):5406-17. doi: 10.1021/jp5022399. Epub 2014 May 13.
8
Flavoprotein oxidases: classification and applications.黄素蛋白氧化酶:分类与应用。
Appl Microbiol Biotechnol. 2013 Jun;97(12):5177-88. doi: 10.1007/s00253-013-4925-7. Epub 2013 May 3.
9
Flavoenzymes: versatile catalysts in biosynthetic pathways.黄酶:生物合成途径中的多功能催化剂。
Nat Prod Rep. 2013 Jan;30(1):175-200. doi: 10.1039/c2np20069d.
10
Towards automated crystallographic structure refinement with phenix.refine.利用phenix.refine实现自动化晶体学结构精修
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):352-67. doi: 10.1107/S0907444912001308. Epub 2012 Mar 16.