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同一底物,多种反应:黄素酶中的氧活化。

Same Substrate, Many Reactions: Oxygen Activation in Flavoenzymes.

机构信息

Molecular Enzymology Group, University of Groningen , Nijenborgh 4, 9747AG Groningen, The Netherlands.

Department of Biology and Biotechnology "Lazzaro Spallanzani", University of Pavia , Via Ferrata 9, 27100 Pavia, Italy.

出版信息

Chem Rev. 2018 Feb 28;118(4):1742-1769. doi: 10.1021/acs.chemrev.7b00650. Epub 2018 Jan 11.

Abstract

Over time, organisms have evolved strategies to cope with the abundance of dioxygen on Earth. Oxygen-utilizing enzymes tightly control the reactions involving O mostly by modulating the reactivity of their cofactors. Flavins are extremely versatile cofactors that are capable of undergoing redox reactions by accepting either one electron or two electrons, alternating between the oxidized and the reduced states. The physical and chemical principles of flavin-based chemistry have been investigated widely. In the following pages we summarize the state of the art on a key area of research in flavin enzymology: the molecular basis for the activation of O by flavin-dependent oxidases and monooxygenases. In general terms, oxidases use O as an electron acceptor to produce HO, while monooxygenases activate O by forming a flavin intermediate and insert an oxygen atom into the substrate. First, we analyze how O reaches the flavin cofactor embedded in the protein matrix through dedicated access pathways. Then we approach O activation from the perspective of the monooxygenases, their preferred intermediate, the C(4a)-(hydro)peroxyflavin, and the cases in which other intermediates have been described. Finally, we focus on understanding how the architectures developed in the active sites of oxidases promote O activation and which other factors operate in its reactivity.

摘要

随着时间的推移,生物已经进化出了应对地球上大量氧气的策略。利用氧气的酶通过调节其辅因子的反应性来严格控制涉及 O 的反应。黄素是一种非常通用的辅因子,能够通过接受一个或两个电子来进行氧化还原反应,在氧化态和还原态之间交替。黄素基化学的物理和化学原理已经得到了广泛的研究。在以下几页中,我们总结了黄素酶学研究的一个关键领域的最新进展:黄素依赖性氧化酶和单加氧酶激活 O 的分子基础。一般来说,氧化酶将 O 用作电子受体来产生 HO,而单加氧酶通过形成黄素中间体并将一个氧原子插入到底物中来激活 O。首先,我们通过专门的通道分析 O 如何到达嵌入蛋白质基质中的黄素辅因子。然后,我们从单加氧酶的角度、它们首选的中间体、C(4a)-(氢)过氧黄素以及已经描述的其他中间体的情况来接近 O 的激活。最后,我们专注于理解氧化酶活性位点中开发的结构如何促进 O 的激活以及哪些其他因素影响其反应性。

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