Reproductive Science Group, Faculty of Science, The University of Newcastle, Callaghan, NSW 2308, Australia.
Priority Research Centre for Reproductive Science, The University of Newcastle, Callaghan, NSW 2308, Australia.
Hum Reprod Update. 2019 Sep 11;25(5):518-540. doi: 10.1093/humupd/dmz017.
A defining feature of sexual reproduction is the transmission of genomic information from both parents to the offspring. There is now compelling evidence that the inheritance of such genetic information is accompanied by additional epigenetic marks, or stable heritable information that is not accounted for by variations in DNA sequence. The reversible nature of epigenetic marks coupled with multiple rounds of epigenetic reprogramming that erase the majority of existing patterns have made the investigation of this phenomenon challenging. However, continual advances in molecular methods are allowing closer examination of the dynamic alterations to histone composition and DNA methylation patterns that accompany development and, in particular, how these modifications can occur in an individual's germline and be transmitted to the following generation. While the underlying mechanisms that permit this form of transgenerational inheritance remain unclear, it is increasingly apparent that a combination of genetic and epigenetic modifications plays major roles in determining the phenotypes of individuals and their offspring.
Information pertaining to transgenerational inheritance was systematically reviewed focusing primarily on mammalian cells to the exclusion of inheritance in plants, due to inherent differences in the means by which information is transmitted between generations. The effects of environmental factors and biological processes on both epigenetic and genetic information were reviewed to determine their contribution to modulating inheritable phenotypes.
Articles indexed in PubMed were searched using keywords related to transgenerational inheritance, epigenetic modifications, paternal and maternal inheritable traits and environmental and biological factors influencing transgenerational modifications. We sought to clarify the role of epigenetic reprogramming events during the life cycle of mammals and provide a comprehensive review of how the genomic and epigenomic make-up of progenitors may determine the phenotype of its descendants.
We found strong evidence supporting the role of DNA methylation patterns, histone modifications and even non-protein-coding RNA in altering the epigenetic composition of individuals and producing stable epigenetic effects that were transmitted from parents to offspring, in both humans and rodent species. Multiple genomic domains and several histone modification sites were found to resist demethylation and endure genome-wide reprogramming events. Epigenetic modifications integrated into the genome of individuals were shown to modulate gene expression and activity at enhancer and promoter domains, while genetic mutations were shown to alter sequence availability for methylation and histone binding. Fundamentally, alterations to the nuclear composition of the germline in response to environmental factors, ageing, diet and toxicant exposure have the potential to become hereditably transmitted.
The environment influences the health and well-being of progeny by working through the germline to introduce spontaneous genetic mutations as well as a variety of epigenetic changes, including alterations in DNA methylation status and the post-translational modification of histones. In evolutionary terms, these changes create the phenotypic diversity that fuels the fires of natural selection. However, rather than being adaptive, such variation may also generate a plethora of pathological disease states ranging from dominant genetic disorders to neurological conditions, including spontaneous schizophrenia and autism.
有性繁殖的一个定义特征是双亲的基因组信息传递给后代。现在有确凿的证据表明,这种遗传信息的传递伴随着额外的表观遗传标记,或者说是稳定的可遗传信息,这些信息不能用 DNA 序列的变化来解释。表观遗传标记的可逆性,加上多次抹去大部分现有模式的表观遗传重编程,使得对这一现象的研究具有挑战性。然而,分子方法的不断进步正在使人们能够更密切地观察伴随发育而来的组蛋白组成和 DNA 甲基化模式的动态变化,特别是这些修饰如何在个体的生殖细胞中发生,并传递给下一代。虽然允许这种跨代遗传形式的潜在机制尚不清楚,但越来越明显的是,遗传和表观遗传修饰的组合在决定个体及其后代的表型方面起着重要作用。
系统地回顾了与跨代遗传有关的信息,主要集中在哺乳动物细胞上,而排除了植物的遗传,因为在世代之间传递信息的方式存在内在差异。综述了环境因素和生物过程对表观遗传和遗传信息的影响,以确定它们对可调节遗传表型的贡献。
使用与跨代遗传、表观遗传修饰、父系和母系可遗传特征以及影响跨代修饰的环境和生物因素相关的关键词,在 PubMed 中搜索索引文章。我们试图阐明哺乳动物生命周期中表观遗传重编程事件的作用,并全面回顾前体的基因组和表观基因组结构如何决定其后代的表型。
我们有强有力的证据支持 DNA 甲基化模式、组蛋白修饰,甚至非蛋白编码 RNA 在改变个体的表观遗传组成并产生从父母到后代的稳定表观遗传效应方面的作用,这在人类和啮齿动物中都得到了证实。多个基因组区域和几个组蛋白修饰位点被发现抵抗去甲基化并耐受全基因组重编程事件。已经表明,整合到个体基因组中的表观遗传修饰可以调节增强子和启动子区域的基因表达和活性,而遗传突变则改变了甲基化和组蛋白结合的序列可用性。从根本上说,生殖细胞对环境因素、衰老、饮食和毒物暴露的核组成的改变有可能遗传。
环境通过生殖细胞发挥作用,引发自发的基因突变和各种表观遗传变化,包括 DNA 甲基化状态和组蛋白翻译后修饰的改变,从而影响后代的健康和幸福。从进化的角度来看,这些变化创造了推动自然选择的表型多样性。然而,这种变化可能不仅是适应性的,也可能产生大量的病理疾病状态,从显性遗传疾病到神经疾病,包括自发的精神分裂症和自闭症。