Tu Zhihui, Yin Jian, Xie Liangxu
State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences; University of Chinese Academy of Sciences.
XtalPi Inc. (Shenzhen Jingtai Technology Co., Ltd.).
J Vis Exp. 2019 Jul 19(149). doi: 10.3791/60040.
The single deuterium substitution in porphycene leads to an asymmetric molecular geometry, which may affect the double proton transfer process in the porphycene molecule. In this study, we applied an enhanced QM/MM method called SITS-QM/MM to investigate hydrogen/deuterium (H/D) isotope effects on the double proton transfer in porphycene. Distance changes in SITS-QM/MM molecular dynamics simulations suggested that the deuterium substituted porphycene adopted the stepwise double proton transfer mechanism. The structural analysis and the free energy shifts of double proton transfer process indicated that the asymmetric isotopic substitution subtly compressed the covalent hydrogen bonds and may alter the original transition state location.
卟吩中的单个氘取代导致不对称分子几何结构,这可能会影响卟吩分子中的双质子转移过程。在本研究中,我们应用了一种称为SITS-QM/MM的增强型QM/MM方法来研究氢/氘(H/D)同位素对卟吩中双质子转移的影响。SITS-QM/MM分子动力学模拟中的距离变化表明,氘取代的卟吩采用逐步双质子转移机制。双质子转移过程的结构分析和自由能变化表明,不对称同位素取代微妙地压缩了共价氢键,并可能改变原始过渡态的位置。