Goodman M, Pedwaydon J, Czelusniak J, Suzuki T, Gotoh T, Moens L, Shishikura F, Walz D, Vinogradov S
Department of Anatomy, Wayne State University School of Medicine, Detroit, Michigan 48201.
J Mol Evol. 1988;27(3):236-49. doi: 10.1007/BF02100080.
A phylogenetic tree was constructed from 245 globin amino acid sequences. Of the six plant globins, five represented the Leguminosae and one the Ulmaceae. Among the invertebrate sequences, 7 represented the phylum Annelida, 13 represented Insecta and Crustacea of the phylum Arthropoda, and 6 represented the phylum Mollusca. Of the vertebrate globins, 4 represented the Agnatha and 209 represented the Gnathostomata. A common alignment was achieved for the 245 sequences using the parsimony principle, and a matrix of minimum mutational distances was constructed. The most parsimonious phylogenetic tree, i.e., the one having the lowest number of nucleotide substitutions that cause amino acid replacements, was obtained employing clustering and branch-swapping algorithms. Based on the available fossil record, the earliest split in the ancestral metazoan lineage was placed at 680 million years before present (Myr BP), the origin of vertebrates was placed at 510 Myr BP, and the separation of the Chondrichthyes and the Osteichthyes was placed at 425 Myr BP. Local "molecular clock" calculations were used to date the branch points on the descending branches of the various lineages within the plant and invertebrate portions of the tree. The tree divided the 245 sequences into five distinct clades that corresponded exactly to the five groups plants, annelids, arthropods, molluscs, and vertebrates. Furthermore, the maximum parsimony tree, in contrast to the unweighted pair group and distance Wagner trees, was consistent with the available fossil record and supported the hypotheses that the primitive hemoglobin of metazoans was monomeric and that the multisubunit extracellular hemoglobins found among the Annelida and the Arthropoda represent independently derived states.
利用245种珠蛋白氨基酸序列构建了系统发育树。在6种植物珠蛋白中,5种代表豆科,1种代表榆科。在无脊椎动物序列中,7种代表环节动物门,13种代表节肢动物门的昆虫纲和甲壳纲,6种代表软体动物门。在脊椎动物珠蛋白中,4种代表无颌类,209种代表有颌类。利用简约原理对这245个序列进行了共同比对,并构建了最小突变距离矩阵。采用聚类和分支交换算法,得到了最简约的系统发育树,即导致氨基酸替换的核苷酸替换数最少的树。根据现有的化石记录,后生动物谱系中最早的分歧发生在距今6.8亿年前(Myr BP),脊椎动物的起源发生在5.1亿年前,软骨鱼纲和硬骨鱼纲的分离发生在4.25亿年前。使用局部“分子钟”计算来确定树的植物和无脊椎动物部分内各个谱系的下降分支上的分支点的年代。该树将245个序列分为五个不同的进化枝,与植物、环节动物、节肢动物出、软体动物和脊椎动物这五个类群完全对应。此外,与非加权配对组和距离瓦格纳树相比,最大简约树与现有的化石记录一致,并支持后生动物的原始血红蛋白是单体的假说,以及在环节动物和节肢动物中发现的多亚基细胞外血红蛋白代表独立衍生状态的假说。