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蛋白质:“煮它们,捣它们,炖它们”。

Proteins: "Boil 'Em, Mash 'Em, Stick 'Em in a Stew".

机构信息

Center for Biophysics and Quantitative Biology , University of Illinois at Urbana-Champaign , Champaign , Illinois 61801 , United States.

Department of Chemistry, Department of Physics, Center for the Physics of Living Cells, and Beckman Institute for Advanced Science and Technology , University of Illinois at Urbana-Champaign , Champaign , Illinois 61801 , United States.

出版信息

J Phys Chem B. 2019 Oct 10;123(40):8341-8350. doi: 10.1021/acs.jpcb.9b05467. Epub 2019 Sep 26.

Abstract

Cells of the vast majority of organisms are subject to temperature, pressure, pH, ionic strength, and other stresses. We discuss these effects in the light of protein folding and protein interactions , in complex environments, in cells, and . Protein phase diagrams provide a way of organizing different structural ensembles that occur under stress and how one can move among ensembles. Experiments that perturb biomolecules or in cells by stressing them have revealed much about the underlying forces that are competing to control protein stability, folding, and function. Two phenomena that emerge and serve to broadly classify effects of the cellular environment are crowding (mainly due to repulsive forces) and sticking (mainly due to attractive forces). The interior of cells is closely balanced between these emergent effects, and stress can tip the balance one way or the other. The free energy scale involved is small but significant on the scale of the "on/off switches" that control signaling in cells or of protein-protein association with a favorable function such as increased enzyme processivity. Quantitative tools from biophysical chemistry will play an important role in elucidating the world of crowding and sticking under stress.

摘要

绝大多数生物的细胞都受到温度、压力、pH 值、离子强度等因素的影响。我们根据蛋白质折叠和蛋白质相互作用的原理,在复杂的环境中,在细胞中讨论这些影响,以及蛋白质相图如何组织在压力下发生的不同结构集合,以及如何在集合之间移动。通过对生物分子或通过对细胞施加压力来干扰它们的实验,揭示了许多竞争控制蛋白质稳定性、折叠和功能的潜在力量。两种现象出现了,并广泛地对细胞环境的影响进行了分类,即拥挤(主要是由于排斥力)和粘连(主要是由于吸引力)。细胞内部在这些新兴效应之间保持着微妙的平衡,而压力可以使平衡向一个方向或另一个方向倾斜。所涉及的自由能尺度虽然很小,但在控制细胞信号转导的“开/关”开关或有利于增加酶的进程等功能的蛋白质-蛋白质相互作用的尺度上,却是非常重要的。生物物理化学的定量工具将在阐明压力下拥挤和粘连的世界中发挥重要作用。

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