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DNA 甲基化:真核生物中的共有和差异特征。

DNA Methylation: Shared and Divergent Features across Eukaryotes.

机构信息

Department of Genetics, University of Georgia, Athens, GA 30602, USA.

Department of Microbiology, University of Georgia, Athens, GA 30602, USA.

出版信息

Trends Genet. 2019 Nov;35(11):818-827. doi: 10.1016/j.tig.2019.07.007. Epub 2019 Aug 6.

DOI:10.1016/j.tig.2019.07.007
PMID:31399242
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6825889/
Abstract

Chemical modification of nucleotide bases in DNA provides one mechanism for conveying information in addition to the genetic code. 5-methylcytosine (5mC) represents the most common chemically modified base in eukaryotic genomes. Sometimes referred to simply as DNA methylation, in eukaryotes 5mC is most prevalent at CpG dinucleotides and is frequently associated with transcriptional repression of transposable elements. However, 5mC levels and distributions are variable across phylogenies, and emerging evidence suggests that the functions of DNA methylation may be more diverse and complex than was previously appreciated. We summarize the current understanding of DNA methylation profiles and functions in different eukaryotic lineages.

摘要

除了遗传密码外,DNA 中核苷酸碱基的化学修饰为信息传递提供了另一种机制。5-甲基胞嘧啶(5mC)是真核生物基因组中最常见的化学修饰碱基。在真核生物中,5mC 通常在 CpG 二核苷酸中最为常见,并且经常与转座元件的转录抑制相关,有时简称为 DNA 甲基化。然而,5mC 的水平和分布在系统发育上是可变的,新出现的证据表明,DNA 甲基化的功能可能比以前认为的更加多样化和复杂。我们总结了不同真核生物谱系中 DNA 甲基化谱和功能的现有认识。

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本文引用的文献

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RdDM-independent de novo and heterochromatin DNA methylation by plant CMT and DNMT3 orthologs.植物 CMT 和 DNMT3 直系同源物介导的 RdDM 非依赖性从头和异染色质 DNA 甲基化。
Nat Commun. 2019 Apr 8;10(1):1613. doi: 10.1038/s41467-019-09496-0.
2
Diversity of cytosine methylation across the fungal tree of life.真菌生命之树中胞嘧啶甲基化的多样性。
Nat Ecol Evol. 2019 Mar;3(3):479-490. doi: 10.1038/s41559-019-0810-9. Epub 2019 Feb 18.
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Dnmt1 is essential for egg production and embryo viability in the large milkweed bug, Oncopeltus fasciatus.Dnmt1 对于大斑芫菁的卵子生产和胚胎活力是必需的。
Epigenetics Chromatin. 2019 Jan 7;12(1):6. doi: 10.1186/s13072-018-0246-5.
4
Dnmt1 has an essential function despite the absence of CpG DNA methylation in the red flour beetle Tribolium castaneum.Dnmt1 在赤拟谷盗(Tribolium castaneum)中缺乏 CpG DNA 甲基化的情况下具有重要功能。
Sci Rep. 2018 Nov 7;8(1):16462. doi: 10.1038/s41598-018-34701-3.
5
Dynamic DNA methylation: In the right place at the right time.动态 DNA 甲基化:在适当的时间出现在适当的位置。
Science. 2018 Sep 28;361(6409):1336-1340. doi: 10.1126/science.aat6806.
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Loss of RNA-Directed DNA Methylation in Maize Chromomethylase and DDM1-Type Nucleosome Remodeler Mutants.玉米染色质甲基转移酶和 DDM1 型核小体重塑酶突变体中 RNA 指导的 DNA 甲基化的缺失。
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