Evolutionary Ecology of Plants, Eberhard-Karls-University, Tübingen, Germany.
Department of Biology, Wake Forest University, Winston-Salem, North Carolina, United States of America.
PLoS One. 2019 Aug 16;14(8):e0221091. doi: 10.1371/journal.pone.0221091. eCollection 2019.
Arbuscular mycorrhizal fungi (AMF) are the most prominent mycobionts of plants in the tropics, yet little is known about their diversity, species compositions and factors driving AMF distribution patterns. To investigate whether elevation and associated vegetation type affect species composition, we sampled 646 mycorrhizal samples in locations between 1000 and 4000 m above sea level (masl) in the South of Ecuador. We estimated diversity, distribution and species compositions of AMF by cloning and Sanger sequencing the 18S rDNA (the section between AML1 and AML2) and subsequent derivation of fungal OTUs based on 99% sequence similarity. In addition, we analyzed the phylogenetic structure of the sites by computing the mean pairwise distance (MPD) and the mean nearest taxon difference (MNTD) for each elevation level. It revealed that AMF species compositions at 1000 and 2000 masl differ from 3000 and 4000 masl. Lower elevations (1000 and 2000 masl) were dominated by members of Glomeraceae, whereas Acaulosporaceae were more abundant in higher elevations (3000 and 4000 masl). Ordination of OTUs with respect to study sites revealed a correlation to elevation with a continuous turnover of species from lower to higher elevations. Most of the abundant OTUs are not endemic to South Ecuador. We also found a high proportion of rare OTUs at all elevations: 79-85% of OTUs occurred in less than 5% of the samples. Phylogenetic community analysis indicated clustering and evenness for most elevation levels indicating that both, stochastic processes and habitat filtering are driving factors of AMF community compositions.
丛枝菌根真菌(AMF)是热带地区植物最主要的菌根共生体,但人们对其多样性、物种组成以及驱动 AMF 分布模式的因素知之甚少。为了研究海拔高度和相关植被类型是否会影响物种组成,我们在厄瓜多尔南部海拔 1000 至 4000 米(masl)的地点采集了 646 个菌根样本。我们通过克隆和 Sanger 测序 18S rDNA(AML1 和 AML2 之间的部分)来估计 AMF 的多样性、分布和物种组成,并根据 99%的序列相似性推导出真菌 OTUs。此外,我们通过计算每个海拔水平的平均配对距离(MPD)和平均最近分类单元差异(MNTD)来分析站点的系统发育结构。结果表明,海拔 1000 和 2000 masl 的 AMF 物种组成与 3000 和 4000 masl 的有所不同。较低的海拔(1000 和 2000 masl)主要由 Glomeraceae 成员组成,而在较高的海拔(3000 和 4000 masl)则更多地存在 Acaulosporaceae。OTUs 的排序与研究地点相关,表明与海拔呈连续的物种更替相关。大多数丰富的 OTUs 并非厄瓜多尔南部特有。我们还发现所有海拔高度都存在大量的稀有 OTUs:在不到 5%的样本中出现了 79-85%的 OTUs。系统发育群落分析表明,大多数海拔水平的聚类和均匀度较高,表明随机过程和生境过滤都是 AMF 群落组成的驱动因素。