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非血红素铁依赖性双加氧酶 TauD 活性部位的强耦合氧化还原相关构象转换。

Strongly Coupled Redox-Linked Conformational Switching at the Active Site of the Non-Heme Iron-Dependent Dioxygenase, TauD.

机构信息

Department of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.

Department of Microbiology and Molecular Genetics , Michigan State University , East Lansing , Michigan 48824 , United States.

出版信息

J Phys Chem B. 2019 Sep 19;123(37):7785-7793. doi: 10.1021/acs.jpcb.9b05866. Epub 2019 Sep 6.

Abstract

2-Oxoglutarate (2OG)-dependent dioxygenases catalyze C-H activation while performing a wide range of chemical transformations. In contrast to their heme analogues, non-heme iron centers afford greater structural flexibility with important implications for their diverse catalytic mechanisms. We characterize an structural model of the putative transient ferric intermediate of 2OG:taurine dioxygenase (TauD) by using a combination of spectroelectrochemical and semiempirical computational methods, demonstrating that the Fe(III/II) transition involves a substantial, fully reversible, redox-linked conformational change at the active site. This rearrangement alters the apparent redox potential of the active site between -127 mV for reduction of the ferric state and +171 mV for oxidation of the ferrous state of the 2OG-Fe-TauD complex. Structural perturbations exhibit limited sensitivity to mediator concentrations and potential pulse duration. Similar changes were observed in the Fe-TauD and taurine-2OG-Fe-TauD complexes, thus attributing the reorganization to the protein moiety rather than the cosubstrates. Redox-difference infrared spectra indicate a reorganization of the protein backbone in addition to the involvement of carboxylate and histidine ligands. Quantitative modeling of the transient redox response using two alternative reaction schemes across a variety of experimental conditions strongly supports the proposal for intrinsic protein reorganization as the origin of the experimental observations.

摘要

2- 氧代戊二酸(2OG)依赖性双加氧酶在进行广泛的化学转化的同时催化 C-H 活化。与它们的血红素类似物相比,非血红素铁中心提供了更大的结构灵活性,这对它们多样化的催化机制有重要影响。我们通过结合光谱电化学和半经验计算方法来表征 2OG:牛磺酸双加氧酶(TauD)的假定瞬态三价铁中间物的结构模型,证明 Fe(III/II) 跃迁涉及在活性位点处发生大量的、完全可逆的、与氧化还原相关的构象变化。这种重排改变了活性位点的表观氧化还原电位,对于 2OG-Fe-TauD 配合物中铁离子的还原,其值为 -127 mV,对于亚铁离子的氧化,其值为 +171 mV。结构扰动对介体浓度和潜在脉冲持续时间的敏感性有限。在 Fe-TauD 和牛磺酸-2OG-Fe-TauD 配合物中也观察到类似的变化,因此将这种重排归因于蛋白质部分而不是共底物。氧化还原差红外光谱表明,除了羧酸盐和组氨酸配体外,蛋白质骨架也发生了重排。使用两种替代反应方案在各种实验条件下对瞬态氧化还原响应进行定量建模强烈支持了蛋白质固有重排作为实验观察的起源的提议。

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