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使用珠磨法DNA提取方法快速且经济高效地构建大小选择的PacBio单分子实时测序模板文库。

Rapid and affordable size-selected PacBio single-molecule real-time sequencing template library construction using the bead-beating DNA extraction method.

作者信息

Kato Kengo, Hashino Masanori, Ito Tamaki, Matsui Mari, Suzuki Satowa, Kai Kumiko, Kitazume Miwako, Sekizuka Tsuyoshi, Kuroda Makoto

机构信息

Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases, 1-23-1 Shinjyuku-ku, Tokyo 162-8640, Japan.

Department of Bacteriology II, National Institute of Infectious Diseases, Musashimurayama, Tokyo 208-0011, Japan.

出版信息

J Biol Methods. 2017 Sep 13;4(3):e79. doi: 10.14440/jbm.2017.169. eCollection 2017.

Abstract

This study demonstrated that bead-beating method facilitates a simple and rapid protocol for genomic DNA isolation for Pacific BioSciences (PacBio) sequencing with library construction of sufficient length. The protocol may also be beneficial for inactivating pathogens by simultaneous and instant DNA fragmentation, with no special equipment required to obtain large DNA fragments. This protocol was comparable in terms of quality to the standard protocol suggested by PacBio and represents an alternative, rapid shortcut for performing accurate PacBio sequencing.

摘要

本研究表明,珠磨法有助于建立一种简单快速的方案,用于为太平洋生物科学公司(PacBio)测序分离基因组DNA,并构建足够长度的文库。该方案还可能有助于通过同时即时的DNA片段化来灭活病原体,无需特殊设备即可获得大片段DNA。就质量而言,该方案与PacBio建议的标准方案相当,是进行准确PacBio测序的一种替代的快速捷径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/970f/6706104/11beedfc3134/jbm-4-3-e79-g001.jpg

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