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密度泛函理论(DFT)泛函和溶剂化模型对铂基抗癌药物远红外光谱预测的影响:为何不同配合物需要不同的理论水平?

Influence of DFT Functionals and Solvation Models on the Prediction of Far-Infrared Spectra of Pt-Based Anticancer Drugs: Why Do Different Complexes Require Different Levels of Theory?

作者信息

Gwee Eunice S H, Seeger Zoe L, Appadoo Dominique R T, Wood Bayden R, Izgorodina Ekaterina I

机构信息

Monash Computational Chemistry Group, School of Chemistry and Centre for Biospectroscopy, School of Chemistry, Monash University, 17 Rainforest Walk, Clayton, Victoria 3800, Australia.

Australian Synchrotron, 800 Blackburn Road, Clayton, Victoria 3168, Australia.

出版信息

ACS Omega. 2019 Mar 13;4(3):5254-5269. doi: 10.1021/acsomega.8b03455. eCollection 2019 Mar 31.

Abstract

Computational modeling was applied to far-infrared (FIR) spectra of Pt-based anticancer drugs to study the hydrolysis of these important molecules. Here, we present a study that investigates the influence of different factors-basis sets on non-Pt atoms, relativistic effective core potentials (RECPs) on the Pt atom, density functional theory (DFT) functionals, and solvation models-on the prediction of FIR spectra of two Pt-based anticancer drugs, cisplatin and carboplatin. Geometry optimizations and frequency calculations were performed with a range of functionals (PBE, PBE0, M06-L, and M06-2X), Dunning's correlation-consisted basis sets (VDZ, VTZ, aVDZ, and aVTZ), RECPs (VDZ-pp, VTZ-pp, aVDZ-pp, and aVTZ-pp), and solvation models (IEFPCM, CPCM, and SMD). The best combination of the basis set/DFT functional/solvation model was identified for each anticancer drug by comparing with experimentally available FIR spectra. Different combinations were established for cisplatin and carboplatin, which was rationalized by means of the partial atomic charge scheme, ChelpG, that was utilized to study the charge transfer between the Pt ion and ligands in both cisplatin and carboplatin.

摘要

将计算建模应用于铂基抗癌药物的远红外(FIR)光谱,以研究这些重要分子的水解过程。在此,我们开展了一项研究,调查不同因素——非铂原子上的基组、铂原子上的相对论有效核势(RECP)、密度泛函理论(DFT)泛函以及溶剂化模型——对两种铂基抗癌药物顺铂和卡铂的FIR光谱预测的影响。使用一系列泛函(PBE、PBE0、M06-L和M06-2X)、邓宁的相关一致基组(VDZ、VTZ、aVDZ和aVTZ)、RECP(VDZ-pp、VTZ-pp、aVDZ-pp和aVTZ-pp)以及溶剂化模型(IEFPCM、CPCM和SMD)进行几何结构优化和频率计算。通过与实验可得的FIR光谱进行比较,确定了每种抗癌药物的基组/DFT泛函/溶剂化模型的最佳组合。顺铂和卡铂建立了不同的组合,通过用于研究顺铂和卡铂中铂离子与配体之间电荷转移的部分原子电荷方案ChelpG对其进行了合理化解释。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dac6/6649127/44c118845116/ao-2018-03455m_0001.jpg

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