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DFT 研究顺铂的分子和晶体结构及振动分析。

DFT study of the molecular and crystal structure and vibrational analysis of cisplatin.

机构信息

Institute of General and Inorganic Chemistry, Bulgarian Academy of Sciences, 11, Acad. G. Bonchev Str., 1113 Sofia, Bulgaria.

Institute of General and Inorganic Chemistry, Bulgarian Academy of Sciences, 11, Acad. G. Bonchev Str., 1113 Sofia, Bulgaria.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2017 Apr 5;176:58-66. doi: 10.1016/j.saa.2017.01.008. Epub 2017 Jan 4.

Abstract

DFT and periodic-DFT (PAW-PBE method, code VASP) calculations have been performed to study the structural and vibrational characteristics of cis-diamminedichloroplatinum(II) (cisplatin) at molecular and outside molecular level. To estimate the effect of the intermolecular interactions in crystal on the structural and vibrational properties of cisplatin, three theoretical models are considered in the present study: monomer (isolated molecule), hydrogen bonded dimer and periodic solid state structures. The work focused on the role of the theoretical models for correct modeling and prediction of geometrical and vibrational parameters of cisplatin. It has been found that the elaborate three-dimensional intermolecular hydrogen bonding network in the crystalline cisplatin significantly influences the structural and vibrational pattern of cisplatin and therefore the isolated cisplatin molecule is not the correct computational model regardless of the theoretical level used. To account for the whole intermolecular hydrogen bonding network in direction of both a and c axis and for more reliable calculations of structural and vibrational parameters periodic DFT calculations were carried out in the full crystalline periodic environment with the known lattice parameters for each cisplatin polymorph phase. The model calculations performed both at molecular level and for the periodic structures of alpha and beta cisplatin polymorph forms revealed the decisive role of the extended theoretical model for reliable prediction of the structural and vibrational characteristics of cisplatin. The powder diffraction pattern and the calculated IR and Raman spectra predicted beta polymorph form of our cisplatin sample freshly synthesized for the purposes of the present study using the Dhara's method. The various rotamers realized in the polymorph forms of cisplatin were explained by the low population of the large number of rotamers in solution as well as with the high rotamer interconversion rate due to the low energy barrier.

摘要

采用密度泛函理论和周期性密度泛函理论(PAW-PBE 方法,VASP 代码)对顺式-二氨二氯合铂(II)(顺铂)在分子和分子外水平的结构和振动特性进行了研究。为了估计晶体中分子间相互作用对顺铂结构和振动性质的影响,本研究考虑了三种理论模型:单体(孤立分子)、氢键二聚体和周期性固态结构。这项工作的重点是理论模型在正确模拟和预测顺铂几何和振动参数方面的作用。研究发现,在结晶顺铂中,精细的三维分子间氢键网络显著影响顺铂的结构和振动模式,因此,无论使用何种理论水平,孤立的顺铂分子都不是正确的计算模型。为了考虑沿 a 和 c 轴的整个分子间氢键网络,并更可靠地计算结构和振动参数,在已知每个顺铂多晶型相晶格参数的完整结晶周期性环境中进行了周期性 DFT 计算。在分子水平和α和β顺铂多晶型形式的周期性结构上进行的模型计算表明,扩展的理论模型对于可靠预测顺铂的结构和振动特性具有决定性作用。使用 Dhara 方法为本次研究目的新鲜合成的我们的顺铂样品的粉末衍射图谱以及计算的红外和拉曼光谱预测了β多晶型形式。在顺铂的多晶型形式中实现的各种旋转异构体通过溶液中大量旋转异构体的低出现率以及由于低能量势垒而导致的高旋转异构体互变异构速率来解释。

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