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消除过渡态计算,以更快、更准确地预测与人类健康和环境相关的硫醇-迈克尔加成反应的反应活性。

Eliminating Transition State Calculations for Faster and More Accurate Reactivity Prediction in Sulfa-Michael Additions Relevant to Human Health and the Environment.

作者信息

Townsend Piers A, Farrar Elliot H E, Grayson Matthew N

机构信息

Centre for Sustainable Chemical Technologies, Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, U.K.

Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, U.K.

出版信息

ACS Omega. 2022 Jul 21;7(30):26945-26951. doi: 10.1021/acsomega.2c03739. eCollection 2022 Aug 2.

Abstract

Fast and accurate computational approaches to predicting reactivity in sulfa-Michael additions are required for high-throughput screening in toxicology (e.g., predicting excess aquatic toxicity and skin sensitization), chemical synthesis, covalent drug design (e.g., targeting cysteine), and data set generation for machine learning. The kinetic glutathione chemoassay is a time-consuming in chemico method used to extract kinetic data in the form of log( ) for organic electrophiles. In this work, we use density functional theory to compare the use of transition states (TSs) and enolate intermediate structures following C-S bond formation in the prediction of log( ) for a diverse group of 1,4 Michael acceptors. Despite the widespread use of transition state calculations in the literature to predict sulfa-Michael reactivity, we observe that intermediate structures show much better performance for the prediction of log( ), are faster to calculate, and easier to obtain than TSs. Furthermore, we show how linear combinations of atomic charges from the isolated Michael acceptors can further improve predictions, even when using inexpensive semiempirical quantum chemistry methods. Our models can be used widely in the chemical sciences (e.g., in the prediction of toxicity relevant to the environment and human health, synthesis planning, and the design of cysteine-targeting covalent inhibitors), and represent a low-cost, sustainable approach to reactivity assessment.

摘要

在毒理学的高通量筛选(例如预测过量的水生毒性和皮肤致敏性)、化学合成、共价药物设计(例如靶向半胱氨酸)以及机器学习的数据集生成中,需要快速且准确的计算方法来预测硫醚-迈克尔加成反应的反应活性。动力学谷胱甘肽化学分析法是一种耗时的化学方法,用于以log( )的形式提取有机亲电试剂的动力学数据。在这项工作中,我们使用密度泛函理论来比较在预测一组不同的1,4-迈克尔受体的log( )时,使用过渡态(TSs)和C-S键形成后的烯醇盐中间体结构的情况。尽管在文献中广泛使用过渡态计算来预测硫醚-迈克尔反应活性,但我们观察到中间体结构在预测log( )方面表现出更好的性能,计算速度更快,并且比过渡态更容易获得。此外,我们展示了即使使用廉价的半经验量子化学方法,孤立的迈克尔受体的原子电荷的线性组合如何能够进一步改善预测。我们的模型可广泛应用于化学科学领域(例如在预测与环境和人类健康相关的毒性、合成规划以及靶向半胱氨酸的共价抑制剂设计中),并且代表了一种低成本、可持续的反应活性评估方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/23ec/9352231/7328f6034a1a/ao2c03739_0002.jpg

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