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本文引用的文献

1
Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers.广泛的选择和基因流在猴面花辐射过程中塑造了基因组景观。
PLoS Biol. 2019 Jul 24;17(7):e3000391. doi: 10.1371/journal.pbio.3000391. eCollection 2019 Jul.
2
A Combinatorial View on Speciation and Adaptive Radiation.物种形成与适应性辐射的组合观点。
Trends Ecol Evol. 2019 Jun;34(6):531-544. doi: 10.1016/j.tree.2019.02.008. Epub 2019 Mar 15.
3
Recombination rate variation shapes barriers to introgression across butterfly genomes.重组率的变化塑造了蝴蝶基因组间基因渐渗的障碍。
PLoS Biol. 2019 Feb 7;17(2):e2006288. doi: 10.1371/journal.pbio.2006288. eCollection 2019 Feb.
4
ABLE: blockwise site frequency spectra for inferring complex population histories and recombination.ABLE:用于推断复杂群体历史和重组的分块位点频率谱。
Genome Biol. 2018 Sep 25;19(1):145. doi: 10.1186/s13059-018-1517-y.
5
Natural selection interacts with recombination to shape the evolution of hybrid genomes.自然选择与重组相互作用,共同塑造杂种基因组的进化。
Science. 2018 May 11;360(6389):656-660. doi: 10.1126/science.aar3684. Epub 2018 Apr 19.
6
Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow.解读物种形成的基因组格局:寻找基因流障碍的路线图。
J Evol Biol. 2017 Aug;30(8):1450-1477. doi: 10.1111/jeb.13047.
7
Population-genomic inference of the strength and timing of selection against gene flow.群体基因组推断对基因流动的选择强度和时间。
Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):7061-7066. doi: 10.1073/pnas.1616755114. Epub 2017 Jun 20.
8
Complex modular architecture around a simple toolkit of wing pattern genes.围绕简单的翅膀图案基因工具包构建的复杂模块化结构。
Nat Ecol Evol. 2017;1(3):52. doi: 10.1038/s41559-016-0052. Epub 2017 Jan 30.
9
Gene flow, ancient polymorphism, and ecological adaptation shape the genomic landscape of divergence among Darwin's finches.基因流动、古老多态性和生态适应塑造了达尔文雀之间分化的基因组格局。
Genome Res. 2017 Jun;27(6):1004-1015. doi: 10.1101/gr.212522.116. Epub 2017 Apr 25.
10
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers.连锁选择和重组率变异驱动了鹟科(Ficedula)捕蝇器物种形成连续体中分化基因组景观的进化。
Genome Res. 2015 Nov;25(11):1656-65. doi: 10.1101/gr.196485.115. Epub 2015 Sep 9.

基因组学能揭示物种起源吗?

Can genomics shed light on the origin of species?

机构信息

Department of Zoology, University of Cambridge, Cambridge, United Kingdom.

出版信息

PLoS Biol. 2019 Aug 30;17(8):e3000394. doi: 10.1371/journal.pbio.3000394. eCollection 2019 Aug.

DOI:10.1371/journal.pbio.3000394
PMID:31469818
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6742472/
Abstract

Evolutionary biologists are increasingly using population genetic variation across genomes to address questions around the origin and ongoing evolution of species. Patterns of differentiation between closely related species are highly variable across the genome, and a wide variety of processes contribute to that variation. There is an emerging pattern of parallelism, whereby different species pairs in groups of related species show similar differentiation patterns across their genomes, offering an opportunity to test hypotheses regarding the processes underlying species differentiation. A recent study used both simulations and empirical data to investigate different forms of selection in a radiation of monkeyflowers. The parallel patterns emerged very rapidly after divergence and could not be readily explained by selection for removal of deleterious mutations but instead likely results from some combination of adaptive evolution, species incompatibilities, and ongoing gene flow. Overall, an emerging pattern is that there may be a surprising degree of predictability in the genetic architecture of species differences across groups of related species.

摘要

进化生物学家越来越多地利用基因组中的种群遗传变异来解决有关物种起源和持续进化的问题。在整个基因组中,密切相关的物种之间的分化模式高度多样化,多种过程导致了这种变异。有一种新兴的平行模式,即相关物种组中的不同物种对在其基因组中表现出相似的分化模式,为检验有关物种分化背后过程的假设提供了机会。最近的一项研究使用模拟和实验数据来研究猴面花辐射中的不同形式的选择。这种平行模式在分化后很快出现,不能简单地用选择去除有害突变来解释,而是可能是适应进化、物种不兼容和持续基因流的某种组合的结果。总的来说,一个新兴的模式是,在相关物种组中,物种差异的遗传结构可能具有惊人的可预测性。