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一种校对功能受损的疱疹病毒产生了具有准种样结构的群体。

A proofreading-impaired herpesvirus generates populations with quasispecies-like structure.

机构信息

Institut für Virologie, Freie Universität Berlin, Berlin, Germany.

Institut für Biologie, Freie Universität Berlin, Berlin, Germany.

出版信息

Nat Microbiol. 2019 Dec;4(12):2175-2183. doi: 10.1038/s41564-019-0547-x. Epub 2019 Sep 2.

Abstract

RNA virus populations are composed of highly diverse individuals that form a cloud of related sequences commonly referred to as a 'quasispecies'. This diversity arises as a consequence of low-fidelity genome replication. By contrast, DNA virus populations contain more uniform individuals with similar fitness. Genome diversity is often correlated with increased fitness in RNA viruses, while DNA viruses are thought to require more faithful genome replication. During DNA replication, erroneously incorporated bases are removed by a 3'-5' exonuclease, a highly conserved enzymatic function of replicative DNA but not RNA polymerases. This proofreading process enhances replication fidelity and ensures the genome integrity of DNA organisms, including large DNA viruses. Here, we show that a herpesvirus can tolerate impaired exonucleolytic proofreading, resulting in DNA virus populations, which, as in RNA viruses, are composed of highly diverse genotypes of variable individual fitness. This indicates that herpesvirus mutant diversity may compensate for individual fitness loss. Notably, in vivo infection with diverse virus populations results in a marked increase in virulence compared to genetically homogenous parental virus. While we cannot exclude that the increase in virulence is caused by selection of and/or interactions between individual genotypes, our findings are consistent with quasispecies dynamics. Our results contrast with traditional views of DNA virus replication and evolution, and indicate that a substantial increase in population diversity can lead to higher virulence.

摘要

RNA 病毒群体由高度多样化的个体组成,这些个体形成了一个相关序列的云,通常被称为“准种”。这种多样性是由于低保真度的基因组复制而产生的。相比之下,DNA 病毒群体包含更均匀的个体,其适应性相似。基因组多样性通常与 RNA 病毒的适应性增加相关,而 DNA 病毒被认为需要更忠实的基因组复制。在 DNA 复制过程中,错误掺入的碱基被 3'-5'外切核酸酶去除,这是一种高度保守的复制 DNA 的酶活性,但不是 RNA 聚合酶。这种校对过程提高了复制保真度,并确保了包括大型 DNA 病毒在内的 DNA 生物的基因组完整性。在这里,我们表明疱疹病毒可以耐受外切核酸酶校对功能受损,从而产生 DNA 病毒群体,这些病毒群体与 RNA 病毒一样,由高度多样化的基因型组成,个体适应性各不相同。这表明疱疹病毒突变体的多样性可能补偿了个体适应性的丧失。值得注意的是,与遗传上同质的亲本病毒相比,感染多样化病毒群体的体内感染会导致毒力显著增加。虽然我们不能排除毒力增加是由个体基因型的选择和/或相互作用引起的,但我们的发现与准种动力学一致。我们的研究结果与传统的 DNA 病毒复制和进化观点形成对比,表明种群多样性的大幅增加可能导致更高的毒力。

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