Dipartimento di Medicina Molecolare e Biotecnologie Mediche, Università degli Studi di Napoli Federico II, 80131 Naples, Italy.
CEINGE Biotecnologie Avanzate, 80145 Naples, Italy.
Genes (Basel). 2019 Aug 30;10(9):663. doi: 10.3390/genes10090663.
In the past years, genome wide association studies (GWAS) have provided evidence that inter-individual susceptibility to diverse pathological conditions can reveal a common genetic architecture. Through the analysis of congenital heart disease (CHD) and neuroblastoma (NB) GWAS data, we aimed to dissect the genetic susceptibility shared between these conditions, which are known to arise from neural crest cell (NCC) migration or development abnormalities, via identification and functional characterization of common regions of association. Two loci (2q35 and 3q25.32) harbor single nucleotide polymorphisms (SNPs) that are associated at a -value < 10 with conotruncal malformations and ventricular septal defect respectively, as well as with NB. In addition, the lead SNP in 4p16.2 for atrial septal defect and the lead SNP in 3q25.32 for tetralogy of Fallot are less than 250 Kb distant from the lead SNPs for NB at the same genomic regions. Some of these shared susceptibility loci regulate the expression of relevant genes involved in NCC formation and developmental processes (such as and ) and are enriched in several epigenetic markers from NB and fetal heart cell lines. Although the clinical correlation between NB and CHD is unclear, our exploration of a possible common genetic basis between NB and a subset of cardiac malformations can help shed light on their shared embryological origin and pathogenetic mechanisms.
在过去的几年中,全基因组关联研究(GWAS)已经提供了证据,表明个体对各种病理状况的易感性可以揭示共同的遗传结构。通过分析先天性心脏病(CHD)和神经母细胞瘤(NB)GWAS 数据,我们旨在通过鉴定和功能表征常见的关联区域,剖析这些已知源于神经嵴细胞(NCC)迁移或发育异常的疾病之间的遗传易感性。两个位点(2q35 和 3q25.32)含有单核苷酸多态性(SNP),这些 SNP 与圆锥干畸形和室间隔缺损分别相关,与 NB 也相关。此外,与 NB 相同基因组区域的房缺的 4p16.2 区域的 lead SNP 和法洛四联症的 3q25.32 区域的 lead SNP 之间的距离不到 250kb。这些共同的易感位点中的一些调节与 NCC 形成和发育过程相关的相关基因的表达(如和),并且在 NB 和胎儿心脏细胞系的几种表观遗传标记中富集。虽然 NB 和 CHD 之间的临床相关性尚不清楚,但我们对 NB 和心脏畸形子集之间可能存在共同遗传基础的探索,可以帮助阐明它们共同的胚胎起源和发病机制。