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建立一种新型冻干粉末试剂实时荧光定量 PCR 检测方法,用于检测中国国内猪血液中的非洲猪瘟病毒。

Development of a novel quantitative real-time PCR assay with lyophilized powder reagent to detect African swine fever virus in blood samples of domestic pigs in China.

机构信息

School of Life Sciences, Zhengzhou University, Zhengzhou, China.

Henan Zhongze Biological Engineering Co. LTD, Zhengzhou, China.

出版信息

Transbound Emerg Dis. 2020 Jan;67(1):284-297. doi: 10.1111/tbed.13350. Epub 2019 Oct 8.

Abstract

African swine fever (ASF) is a devastating disease, which is causing huge economic losses in China. Therefore, it is urgent to provide a rapid, highly specific and sensitive diagnostic method for the detection of African swine fever virus (ASFV), the ASF infectious agent. In this study, a novel quantitative real-time polymerase chain reaction (qPCR) assay with lyophilized powder reagents (LPR), targeting the major structural protein p72 gene, was established for the detection of ASFV. This assay had many advantages, such as saving time and money, good sensitivity and repeatability. The sensitivity of this assay was 100 copies/μl of ASFV plasmid templates, and the assay showed 10-fold greater sensitivity than a qPCR assay recommended by OIE. Furthermore, specificity analysis showed that qPCR with LPR for ASFV had no cross-reactivity with other important swine pathogens. In clinical diagnoses of 218 blood samples of domestic pigs in China, the positive rate of the diagnosis of ASFV by qPCR with the LPR and commercial kit reached 80.73% (176/218) and 76.61% (167/218) respectively. The coincidence rate between the two assays is 92.20% (201/218), and kappa value is 0.768 (p < .0001) by SPSS analysis. The overall agreement between the two assays was 95.87% (209/218). Further Pearson correlation and linear regression analysis showed a significant correlation between the two assays with an R value of 0.9438. The entire procedure, from specimen processing to result reporting, can be completed within 2 hr. Our results demonstrated that the qPCR-LPR assay is a good laboratory diagnostic tool for sensitive and efficient detection of ASFV.

摘要

非洲猪瘟(ASF)是一种毁灭性疾病,在中国造成了巨大的经济损失。因此,迫切需要提供一种快速、高度特异和敏感的诊断方法,用于检测非洲猪瘟病毒(ASFV),即 ASF 的传染性病原体。在本研究中,建立了一种针对主要结构蛋白 p72 基因的新型冻干粉末试剂(LPR)实时定量聚合酶链反应(qPCR)检测方法,用于检测 ASFV。该方法具有节省时间和金钱、良好的灵敏度和重复性等优点。该方法的灵敏度为 100 个 ASFV 质粒模板拷贝/μl,比 OIE 推荐的 qPCR 方法高 10 倍。此外,特异性分析表明,LPR 的 qPCR 对 ASFV 没有交叉反应性,与其他重要的猪病原体没有交叉反应性。在中国对 218 份国内猪血液样本进行临床诊断时,LPR 和商业试剂盒的 qPCR 对 ASFV 的阳性检出率分别为 80.73%(176/218)和 76.61%(167/218)。两种检测方法的符合率为 92.20%(201/218),SPSS 分析的 Kappa 值为 0.768(p<0.0001)。两种检测方法的总体一致性为 95.87%(209/218)。进一步的 Pearson 相关性和线性回归分析显示,两种检测方法之间存在显著相关性,R 值为 0.9438。从样本处理到结果报告,整个过程可以在 2 小时内完成。我们的结果表明,qPCR-LPR 检测方法是一种用于敏感、高效检测 ASFV 的良好实验室诊断工具。

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