Thomas Dennis G, Shankaran Harish, Truong Lisa, Tanguay Robert L, Waters Katrina M
Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352.
Environmental and Molecular Toxicology, Oregon State University, Corvallis, OR 97331.
Comput Toxicol. 2019 Feb;9:50-60. doi: 10.1016/j.comtox.2018.11.001. Epub 2018 Nov 10.
High-content imaging of larval zebrafish behavior can be used as a screening approach to rapidly evaluate the relative potential for chemicals to cause toxicity. However, most statistical methods applied to these data transform movement values to incidence-based "hits" and calculate lowest effect levels (LELs), which loses individual fish resolution of behavior and defies hazard ranking due to reliance on applied dose levels. We developed a parallelizable workflow to calculate benchmark dose (BMD) values from dynamic, high-content zebrafish behavior data that scales for high-throughput chemical screening. To capture the zebrafish movement response from light to dark stimulus, we summarized time-dependent data using both area under the curve and the immediate change at the transition point into two novel metrics that characterized abnormal behavior as a function of chemical concentration. The BMD workflow was applied to calculate BMD values of 1,060 ToxCast chemicals for 24 zebrafish endpoints, including behavior, mortality and morphology. The BMD values provided better precision and separation than LELs for clustering chemicals since they were derived from models that best-fit their concentration-response curves. Analysis of BMD values revealed behavioral signatures as the most sensitive endpoints. High concordance in chemical activity was observed between ToxCast data and zebrafish behavioral data, however ToxPi analysis indicated that rankings based on data were not a reliable predictor of rankings for lower potency chemicals. This analysis method will enable the use of high-content zebrafish behavioral screening data for BMD analysis in toxicological hazard assessment.
斑马鱼幼体行为的高内涵成像可作为一种筛选方法,用于快速评估化学物质导致毒性的相对可能性。然而,大多数应用于这些数据的统计方法会将运动值转换为基于发生率的“命中”情况,并计算最低效应水平(LEL),这会丢失个体鱼类行为的分辨率,并且由于依赖所施加的剂量水平而无法进行危害排名。我们开发了一种可并行化的工作流程,用于从动态的、高内涵斑马鱼行为数据中计算基准剂量(BMD)值,该工作流程可扩展用于高通量化学筛选。为了捕捉斑马鱼对从明到暗刺激的运动反应,我们使用曲线下面积和过渡点处的即时变化对随时间变化的数据进行总结,得到两个新的指标,将异常行为表征为化学物质浓度的函数。BMD工作流程被应用于计算1060种ToxCast化学物质针对24个斑马鱼终点的BMD值,这些终点包括行为、死亡率和形态学。BMD值在对化学物质进行聚类时比LEL提供了更高的精度和区分度,因为它们源自最适合其浓度 - 反应曲线的模型。对BMD值的分析表明行为特征是最敏感的终点。在ToxCast数据和斑马鱼行为数据之间观察到化学活性的高度一致性,然而ToxPi分析表明,基于该数据的排名对于低效力化学物质而言并非可靠的排名预测指标。这种分析方法将使高内涵斑马鱼行为筛选数据能够用于毒理学危害评估中的BMD分析。