Zamanian Azodi Mona, Rezaei-Tavirani Mostafa, Rezaei-Tavirani Majid, Robati Reza Mahmoud
Proteomics Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Proteomics Research Center, Faculty of Paramedical Sciences, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Int J Endocrinol Metab. 2019 May 14;17(3):e86640. doi: 10.5812/ijem.86640. eCollection 2019 Jul.
Gestational diabetes mellitus (GDM) is pregnancy-related diabetes with vital risks for both mother and the fetus. Molecular studies represent one of the popular approaches for investigating mechanisms associated with the disease nature. One of which is through interaction network analysis via Cytoscape V. 3.6.1.
In this study, the microRNA (miRNA) expression array of GSE98043 from gene expression omnibus (GEO) database was retrieved and screened. We identified 12 differentially expressed (DE) miRNAs (P ≤ 0.05) and nine target hub-bottleneck genes (disease score > 1) for GDM based on miRNA-target interactions created via plugin ClueGO + Cluepedia + STRING.
MiRNA-target information showed that the miRNAs are mostly up-regulated and hsa-miR-145-5p and hsa-miR-875-5p targets the most genes. Among target genes, IL6, GCG, APOB, and ALB have the highest associations with DE-miRNAs. Gene ontology analysis based on biological processes identification via ClueGO + CluePedia, in addition, showed that target hub-bottlenecks are mainly related to metabolism functions and any changes in this regulatory network could impose fundamental alterations in these processes.
It can be concluded that via these introduced miRNAs and their targets, the molecular tests for diagnosis and treatment of GDM can be improved after applying validation approaches.
妊娠期糖尿病(GDM)是与妊娠相关的糖尿病,对母亲和胎儿均有重大风险。分子研究是探究与该疾病本质相关机制的常用方法之一。其中一种方法是通过Cytoscape V. 3.6.1进行相互作用网络分析。
在本研究中,从基因表达综合数据库(GEO)中检索并筛选了GSE98043的微小RNA(miRNA)表达阵列。基于通过插件ClueGO + Cluepedia + STRING创建的miRNA-靶标相互作用,我们鉴定出12个差异表达(DE)的miRNA(P≤0.05)和9个GDM的靶标枢纽瓶颈基因(疾病评分>1)。
miRNA-靶标信息显示,这些miRNA大多上调,且hsa-miR-145-5p和hsa-miR-875-5p靶向的基因最多。在靶标基因中,IL6、GCG、APOB和ALB与DE-miRNA的关联度最高。此外,通过ClueGO + CluePedia基于生物学过程识别进行的基因本体分析表明,靶标枢纽瓶颈主要与代谢功能相关,该调控网络中的任何变化都可能导致这些过程发生根本性改变。
可以得出结论,通过这些引入的miRNA及其靶标,在应用验证方法后,可以改进GDM诊断和治疗的分子检测。